Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_011287.1 Length=58554 Score E Sequences producing significant alignments: (Bits) Value seq24349 535 2e-147 >seq24349 Length=3626 Score = 535 bits (592), Expect = 2e-147 Identities = 595/792 (75%), Gaps = 9/792 (1%) Strand=Plus/Minus Query 42729 GGTGATGCTCGGGCAGGGCATGAACCTGCAACAGGCACACACCTGCGTCTACATCGGCAT 42788 |||||||||||| ||||||||||||||||| ||||| ||||| ||||| | ||||| | Sbjct 2300 GGTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGT 2241 Query 42789 CACACACAAGTTCAACGACCTCATCCAAAGCCTGCACCGGATCCAGCGGTTCGGCCAAAC 42848 ||| |||| ||||||||| ||||| | ||||||| |||||||| ||||| || Sbjct 2240 CACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAGCA 2181 Query 42849 CCACCCCTGCACAGCCCATCTCATCCACTCCGAAACCGAACGGGAAGTGGTTCGCATCAT 42908 | ||||| | || || ||| || |||||||||| || | | ||| || Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 42909 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATCCA 42965 || | | ||| |||| | | ||| || | || || |||| |||| | |||| Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 42966 CGAATACGGGCTTGACCCCGAGGCAATCTCGGAAGCGCTGCAACGCTCCATCGGATGCGA 43025 ||| | ||| || |||||| || ||||| | || || ||| |||| || ||| Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 43026 ACGCATCGAAGCATCCGGCGAGGGATGGCTGTTCGCCAACAACGACTGCGTACCCGAAAC 43085 ||| ||||||||||||| || ||| | |||| |||||||||||| ||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 43086 C---GAGTCGATGGACGACAACTCGGTGGACCTGATCGTCACCAGCATTCCGTTCTCGAA 43142 | || |||| | |||| || |||||||||||||| || ||||||||||| Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 43143 CCACTACGAATACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCCCATTT 43202 ||||||||| ||||| || ||||||||||||||||||||||||||||||||| || || Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 43203 CTGGGCCCAGATGGACTACCTCACGCCGCAACTGCTGCGGGTCCTCGCTCCTGGCCGGAT 43262 |||| ||||||||||||||||| ||| | || |||||||| || ||| || ||||| Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCTGCGTCCAGGACGGAT 1764 Query 43263 CTATGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCAGGCGTCCC 43322 ||||||||||||||| ||||| || ||| |||||||||||||||||| || ||| |||| Sbjct 1763 CTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCCC 1704 Query 43323 CACCGTCTCCCCGTTCCACGCCGAGGCGATCTTTCACGGCCGCAAACACGGCTTCGACTA 43382 ||||||||| |||||||||||||| ||| || ||||||| ||| || ||||||||||| Sbjct 1703 CACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACTA 1644 Query 43383 CCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCT 43442 | | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| || Sbjct 1643 CATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCCT 1584 Query 43443 GGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGT 43502 |||| | ||| | |||| |||| ||| ||||||||||| ||||| || || ||| | Sbjct 1583 CGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACAT 1524 Query 43503 TCTGCTGTTCCA 43514 ||||| ||||| Sbjct 1523 CCTGCTCTTCCA 1512 Score = 165 bits (182), Expect = 3e-36 Identities = 181/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 41487 CGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC-ACTG- 41544 ||| |||||| |||| |||||||||||||| ||||| || |||| ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 41545 TTCACGGCCGTTTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACGTAC 41604 ||| || || ||||||||||| |||||||||||| ||||| || ||||| ||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 41605 CAGTCGTTCCTGGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGGCCACGCCA 41664 ||| |||||| | |||||||||| | | || ||||| | ||| || || || ||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 41665 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGAC 41721 || || |||||| |||||||||||||||||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186753033981720