Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_011287.1
Length=58554
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 535 2e-147
>seq24349
Length=3626
Score = 535 bits (592), Expect = 2e-147
Identities = 595/792 (75%), Gaps = 9/792 (1%)
Strand=Plus/Minus
Query 42729 GGTGATGCTCGGGCAGGGCATGAACCTGCAACAGGCACACACCTGCGTCTACATCGGCAT 42788
|||||||||||| ||||||||||||||||| ||||| ||||| ||||| | ||||| |
Sbjct 2300 GGTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGT 2241
Query 42789 CACACACAAGTTCAACGACCTCATCCAAAGCCTGCACCGGATCCAGCGGTTCGGCCAAAC 42848
||| |||| ||||||||| ||||| | ||||||| |||||||| ||||| ||
Sbjct 2240 CACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAGCA 2181
Query 42849 CCACCCCTGCACAGCCCATCTCATCCACTCCGAAACCGAACGGGAAGTGGTTCGCATCAT 42908
| ||||| | || || ||| || |||||||||| || | | ||| ||
Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124
Query 42909 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATCCA 42965
|| | | ||| |||| | | ||| || | || || |||| |||| | ||||
Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064
Query 42966 CGAATACGGGCTTGACCCCGAGGCAATCTCGGAAGCGCTGCAACGCTCCATCGGATGCGA 43025
||| | ||| || |||||| || ||||| | || || ||| |||| || |||
Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004
Query 43026 ACGCATCGAAGCATCCGGCGAGGGATGGCTGTTCGCCAACAACGACTGCGTACCCGAAAC 43085
||| ||||||||||||| || ||| | |||| |||||||||||| ||| ||
Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944
Query 43086 C---GAGTCGATGGACGACAACTCGGTGGACCTGATCGTCACCAGCATTCCGTTCTCGAA 43142
| || |||| | |||| || |||||||||||||| || |||||||||||
Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884
Query 43143 CCACTACGAATACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCCCATTT 43202
||||||||| ||||| || ||||||||||||||||||||||||||||||||| || ||
Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824
Query 43203 CTGGGCCCAGATGGACTACCTCACGCCGCAACTGCTGCGGGTCCTCGCTCCTGGCCGGAT 43262
|||| ||||||||||||||||| ||| | || |||||||| || ||| || |||||
Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCTGCGTCCAGGACGGAT 1764
Query 43263 CTATGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCAGGCGTCCC 43322
||||||||||||||| ||||| || ||| |||||||||||||||||| || ||| ||||
Sbjct 1763 CTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCCC 1704
Query 43323 CACCGTCTCCCCGTTCCACGCCGAGGCGATCTTTCACGGCCGCAAACACGGCTTCGACTA 43382
||||||||| |||||||||||||| ||| || ||||||| ||| || |||||||||||
Sbjct 1703 CACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACTA 1644
Query 43383 CCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCT 43442
| | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| ||
Sbjct 1643 CATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCCT 1584
Query 43443 GGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATACGT 43502
|||| | ||| | |||| |||| ||| ||||||||||| ||||| || || ||| |
Sbjct 1583 CGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACAT 1524
Query 43503 TCTGCTGTTCCA 43514
||||| |||||
Sbjct 1523 CCTGCTCTTCCA 1512
Score = 165 bits (182), Expect = 3e-36
Identities = 181/237 (76%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 41487 CGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC-ACTG- 41544
||| |||||| |||| |||||||||||||| ||||| || |||| ||| | || |
Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137
Query 41545 TTCACGGCCGTTTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACGTAC 41604
||| || || ||||||||||| |||||||||||| ||||| || ||||| |||
Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077
Query 41605 CAGTCGTTCCTGGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGGCCACGCCA 41664
||| |||||| | |||||||||| | | || ||||| | ||| || || || |||||
Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017
Query 41665 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGAC 41721
|| || |||||| |||||||||||||||||||||| || | ||||| | ||||||
Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 186753033981720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |