Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq39107 113 4e-20 seq52342 109 5e-19 seq67758 86.0 6e-12 seq58197 84.2 2e-11 >seq39107 Length=55737 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || ||||||||||| || ||||| || |||||||| ||||| |||||||| Sbjct 26782 ATTCCACCACGAAGCCTCAACACCAGGTGCAGAGTAGATTCCTTCTGGATGTTATAATCA 26723 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| |||| || || || || | || | | ||||||||| || Sbjct 26722 GCAAGGGTTCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGT 26663 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || || || ||| || | || | ||| || ||| || Sbjct 26662 GGAATACCCTCTTTGTCCTGTATCTTTGCCTTTACATTGTCAATGGTATCAGAACTTTCA 26603 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || || ||||| || |||||||||||||| Sbjct 26602 ACCTCCAAAGTAATAGTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCAT 26553 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || ||||||||||| || ||||| || |||||||| ||||| |||||||| Sbjct 30105 ATTCCACCACGAAGCCTCAACACCAGGTGCAGAGTAGATTCCTTCTGGATGTTATAATCA 30046 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| |||| || || || || | || | | ||||||||| || Sbjct 30045 GCAAGGGTTCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGT 29986 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || || || ||| || | || | ||| || ||| || Sbjct 29985 GGAATACCCTCTTTGTCCTGGATCTTTGCCTTTACATTATCAATGGTATCAGAACTTTCA 29926 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || || ||||| || |||||||||||||| Sbjct 29925 ACCTCCAAAGTAATAGTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCAT 29876 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || ||||||||||| || ||||| || |||||||| ||||| |||||||| Sbjct 41619 ATTCCACCACGAAGCCTCAACACCAGGTGCAGAGTAGATTCCTTCTGGATGTTATAATCA 41560 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| |||| || || || || | || | | ||||||||| || Sbjct 41559 GCAAGGGTTCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGT 41500 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || || || ||| || | || | ||| || ||| || Sbjct 41499 GGAATACCCTCTTTGTCCTGTATCTTTGCCTTTACATTGTCAATGGTATCAGAACTTTCA 41440 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || || ||||| || |||||||||||||| Sbjct 41439 ACCTCCAAAGTAATAGTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCAT 41390 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || |||||||| || || ||||| || |||||||| |||||||||||||| Sbjct 43772 ATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCCTTCTGGATATTATAATCC 43713 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || ||| | || | | |||||||| || Sbjct 43712 GCAAGAGTTCTTCCATCTTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCTGGG 43653 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| ||||| || ||| | || | ||| || ||| |||| Sbjct 43652 GGAATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCG 43593 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || || | ||| || ||||| |||||||| Sbjct 43592 ACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 43543 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || |||||||| || || ||||| || |||||||| |||||||||||||| Sbjct 48782 ATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCCTTCTGGATATTATAATCC 48723 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || ||| | || | | |||||||| || Sbjct 48722 GCAAGAGTTCTTCCATCTTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCTGGG 48663 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| ||||| || ||| | || | ||| || ||| |||| Sbjct 48662 GGAATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCG 48603 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || || | ||| || ||||| |||||||| Sbjct 48602 ACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 48553 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || |||||||| || || ||||| || |||||||| |||||||||||||| Sbjct 50045 ATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCCTTCTGGATATTATAATCC 49986 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || ||| | || | | |||||||| || Sbjct 49985 GCAAGAGTTCTTCCATCTTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCTGGG 49926 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| ||||| || ||| | || | ||| || ||| |||| Sbjct 49925 GGAATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCG 49866 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || || | ||| || ||||| |||||||| Sbjct 49865 ACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 49816 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| ||||| | ||| || || |||||||| ||||| |||||||| Sbjct 17008 ATACCCCCACGAAGCCTTAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCA 16949 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| || || || || | || | | ||||||||| || Sbjct 16948 GCAAGTGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGT 16889 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || || || ||| || | || | ||| || ||| || Sbjct 16888 GGAATACCCTCTTTGTCCTGTATCTTTGCCTTTACATTGTCAATGGTATCAGAACTTTCA 16829 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || || ||||| || |||||||||||||| Sbjct 16828 ACCTCCAAAGTAATAGTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCAT 16779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || |||||||| || || ||||| || ||||| || ||||| || ||||| Sbjct 44000 ATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCC 43941 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | ||||| || || | || | | ||||| || || Sbjct 43940 GCAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGG 43881 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| ||||| ||| ||| | || | || || ||| ||| Sbjct 43880 GGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAACTCTCC 43821 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | || ||||||||||||||||| Sbjct 43820 ACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCAT 43771 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || |||||||| || || ||||| || ||||| || ||||| || ||||| Sbjct 49010 ATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCC 48951 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || || | || | | ||||| || || Sbjct 48950 GCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGG 48891 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| ||||| ||| ||| | || | || || ||| ||| Sbjct 48890 GGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAACTCTCC 48831 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | || ||||||||||||||||| Sbjct 48830 ACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCAT 48781 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || |||||||| || || ||||| || ||||| || ||||| || ||||| Sbjct 50273 ATTCCACCACGAAGCCTCAAAACCAGGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCC 50214 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || || | || | | ||||| || || Sbjct 50213 GCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGG 50154 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| ||||| ||| ||| | || | || || ||| ||| Sbjct 50153 GGGATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAACTCTCC 50094 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | || ||||||||||||||||| Sbjct 50093 ACTTCCAAAGTTATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTGCAT 50044 >seq52342 Length=11406 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | |||| || || ||||||||||| ||||| || || ||| Sbjct 9958 ATGCCACCGCGGAGGCGGAGAACTAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG 10017 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||| || ||||| ||| | || | ||||||||||| || Sbjct 10018 GCGAGGGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGG 10077 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||| || || || || | || | || | |||||||| ||| Sbjct 10078 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATAGTGTCGGAGCTCTC 10136 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||| | || || ||||| || || || || || || |||||| Sbjct 10137 GACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATCTGCATC 10188 >seq67758 Length=6344 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || || || || || || ||||| |||||||| || || Sbjct 5123 CCACCACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 5064 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||| || || |||||| | |||| | ||||||||||| ||| Sbjct 5063 AGGGTCCTCCCATCTTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 5004 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || |||||||| || | || | |||||| ||| ||| || Sbjct 5003 ATTCCCTCCTTGTCCTGAATTTTCGCCTTCACATTGTCAATGGTGTCAGAACTCTCAACC 4944 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || || || || | || || |||||||| ||||| Sbjct 4943 TCCAGAGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 4897 >seq58197 Length=5457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| || || | || | |||||||||||||| || || ||||| || |||||||| Sbjct 5457 TGTTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATC 5398 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || ||| | || | || | ||| || || ||| ||||||||||| | || || || Sbjct 5397 TTAGCTTTTA-CGTTATCAATGGTATCTGAGCTCTCTACTTCGAGAGTGATGGTCTTACC 5339 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || || || ||||||||| Sbjct 5338 GGTGAGAGTCTTAACGAAGATTTGCATC 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450737393288600