Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq61441 113 1e-20 >seq61441 Length=859 Score = 113 bits (124), Expect = 1e-20 Identities = 184/262 (70%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 8866 CTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGA 8925 ||||| | || || ||||| || | || ||| ||||||||||||||||||| || || Sbjct 550 CTCAAGCTCATCGCCAAGGAGCTGCAGGTGCCGGTCATCGCGCTGTCGCAGCTGAACCGT 609 Query 8926 GGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCG 8985 || | |||| | |||| ||||| ||||| || ||| ||||| ||||| || || Sbjct 610 GGTCCCGAGCAGCGCCAGGACAAGAAGCCCGCGATCAGCGACCTGCGAGAGTCCGGATCG 669 Query 8986 ATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGAC 9045 ||||||||||| |||||| || || || | | ||||||| |||||| || || Sbjct 670 ATCGAGCAGGACGCCGACATGGTCATCCTGCTGCACCGCGACTCGGTCTACGACAAGGA- 728 Query 9046 AGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGC 9105 || || ||| |||||| ||||| | || ||||| || ||||| |||| | Sbjct 729 --CGTCCGTCCCGGCGAGGCCGACCTCATCGTGGCCAAGCATCGTAACGGTCCGACCGCG 786 Query 9106 ACCGT-ACGGCTCGCATTCCAG 9126 ||| | || | |||| |||||| Sbjct 787 ACCATCACCG-TCGCCTTCCAG 807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127206275692860