Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq205188 127 3e-24 seq222699 122 1e-22 seq217650 86.0 8e-12 seq64330 86.0 8e-12 >seq205188 Length=846 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||||||||| |||||||||||||| || |||||| || ||||||||||| ||| Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||| | |||||| || | ||||| || ||||||||||| ||||| || || Sbjct 61 CGTTTCTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAG 120 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 || || || | | |||||||| |||||| Sbjct 121 GCAAATGCGACGATGCGCTCGGCGAAGGAG 150 >seq222699 Length=2956 Score = 122 bits (134), Expect = 1e-22 Identities = 186/262 (71%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || || || || || |||||||| || |||||| || || ||||| | || Sbjct 655 GTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCC 596 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | ||| || |||| || || ||| ||||||||||| ||||| || || Sbjct 595 GCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCA 536 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | || ||||||||||||||| || | | ||| | ||| || || Sbjct 535 GGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGG---TGGCATCGATCCAGCGCAAGGC 479 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| || ||| ||| |||| ||| | | || || || | ||||| Sbjct 478 CCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAACAGGTGATTCTT 419 Query 127771 TTCTGATGGA-TCTTTGATGTA 127791 ||| | |||| ||||||||||| Sbjct 418 TTC-GGTGGAGTCTTTGATGTA 398 >seq217650 Length=1534 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| |||| || || || ||||| ||||| | ||||| || | | Sbjct 1177 AACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA--C 1120 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | || ||||||||||| || ||||||||||| || | Sbjct 1119 CTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATGC 1060 Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 ||||| || ||| | | | ||||| | ||| | ||| ||| ||||| || ||| Sbjct 1059 ACGGTGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCCC 1001 Query 12969 ACAAACATCTCCACAAA 12985 ||||||| |||||| || Sbjct 1000 ACAAACAGCTCCACGAA 984 >seq64330 Length=14123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| |||| || || || ||||| ||||| | ||||| || | | Sbjct 8588 AACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA--C 8645 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | || ||||||||||| || ||||||||||| || | Sbjct 8646 CTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATGC 8705 Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 ||||| || ||| | | | ||||| | ||| | ||| ||| ||||| || ||| Sbjct 8706 ACGGTGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCCC 8764 Query 12969 ACAAACATCTCCACAAA 12985 ||||||| |||||| || Sbjct 8765 ACAAACAGCTCCACGAA 8781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611789111430600