Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 127 3e-24
seq222699 122 1e-22
seq217650 86.0 8e-12
seq64330 86.0 8e-12
>seq205188
Length=846
Score = 127 bits (140), Expect = 3e-24
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|||||||||||||| |||||||||||||| || |||||| || ||||||||||| |||
Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
|| ||||| | |||||| || | ||||| || ||||||||||| ||||| || ||
Sbjct 61 CGTTTCTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAG 120
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAG 127681
|| || || | | |||||||| ||||||
Sbjct 121 GCAAATGCGACGATGCGCTCGGCGAAGGAG 150
>seq222699
Length=2956
Score = 122 bits (134), Expect = 1e-22
Identities = 186/262 (71%), Gaps = 5/262 (2%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| || || || || || || |||||||| || |||||| || || ||||| | ||
Sbjct 655 GTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCC 596
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | ||| || |||| || || ||| ||||||||||| ||||| || ||
Sbjct 595 GCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCA 536
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710
||||| || | || ||||||||||||||| || | | ||| | ||| || ||
Sbjct 535 GGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGG---TGGCATCGATCCAGCGCAAGGC 479
Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770
||| || ||||| || ||| ||| |||| ||| | | || || || | |||||
Sbjct 478 CCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAACAGGTGATTCTT 419
Query 127771 TTCTGATGGA-TCTTTGATGTA 127791
||| | |||| |||||||||||
Sbjct 418 TTC-GGTGGAGTCTTTGATGTA 398
>seq217650
Length=1534
Score = 86.0 bits (94), Expect = 8e-12
Identities = 140/197 (71%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851
|| ||||||||||| |||| || || || ||||| ||||| | ||||| || | |
Sbjct 1177 AACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA--C 1120
Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909
| | | ||||| | | ||| | || ||||||||||| || ||||||||||| || |
Sbjct 1119 CTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATGC 1060
Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968
||||| || ||| | | | ||||| | ||| | ||| ||| ||||| || |||
Sbjct 1059 ACGGTGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCCC 1001
Query 12969 ACAAACATCTCCACAAA 12985
||||||| |||||| ||
Sbjct 1000 ACAAACAGCTCCACGAA 984
>seq64330
Length=14123
Score = 86.0 bits (94), Expect = 8e-12
Identities = 140/197 (71%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851
|| ||||||||||| |||| || || || ||||| ||||| | ||||| || | |
Sbjct 8588 AACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA--C 8645
Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909
| | | ||||| | | ||| | || ||||||||||| || ||||||||||| || |
Sbjct 8646 CTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATGC 8705
Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968
||||| || ||| | | | ||||| | ||| | ||| ||| ||||| || |||
Sbjct 8706 ACGGTGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCCC 8764
Query 12969 ACAAACATCTCCACAAA 12985
||||||| |||||| ||
Sbjct 8765 ACAAACAGCTCCACGAA 8781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611789111430600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |