Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq222699 168 1e-36 >seq222699 Length=2956 Score = 168 bits (186), Expect = 1e-36 Identities = 524/802 (65%), Gaps = 23/802 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||| || || ||||| || ||||||| | ||||| ||||| | | || || || Sbjct 940 CTTTTCAAAGAAGTTAGTTTTGCCCTGGAGAGATATAAGCTCCATCCAGTCAAAGGGATT 881 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || || || |||| |||| || || ||||||||| ||| || ||||| || Sbjct 880 CTGAACACCGTACACCTTCCCGCATCCAAGCGCACCCAGCAACCGGTCCGCAACAAACTC 821 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 || || || ||| |||| | ||| ||||||| || | | ||| ||||| || | Sbjct 820 AATATATTGACTCATTAGCTCCCCGTTCATCCCCACCAACGCACAGGGAAGCGCGTCGCA 761 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || |||||| |||| || || ||||||||| |||||||| | || || |||| Sbjct 760 CACAAACTCTCTCTCTATGTCAACCGCTTCGCGCACAATCTCCTTCACGCGCTCGTCGGT 701 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 |||| | | | | | | ||| ||||||||| ||||||||||| || || || Sbjct 700 GAGCTTCCTCCTGAGGAGAGAGT---ACAAGAGGCACGCGAAGTCGCAGTGAAGCCCTTC 644 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 || || || |||| |||||||| | | ||||||| ||||| | || ||| || || Sbjct 643 ATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCCGCGCTTCTTTAG 584 Query 160009 CCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 |||||| || | ||| |||| ||| || ||||| ||||| ||| || || || | Sbjct 583 CCAAAATATCG-AGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGA 525 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCT 160127 |||| | ||| ||| ||| || |||| ||| | |||| | |||||||| |||| Sbjct 524 CGAGGCGCTCGGCAA---AGGAGTCGGTGGCATCGATCCAGCGCAAGGCCCATTGGGCCT 468 Query 160128 TCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACAT 160187 |||| |||| || || ||| || |||||| |||| | || || | | Sbjct 467 TCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAACAGGTGATTCTTTTCGGTGGAGT 408 Query 160188 CCTTGATCAGAGTAGCAATC--AGCTTCGA--GTACATTTCTGCGTGCACATTTTCGATG 160243 | ||||| |||| || || || |||||| || | ||| | || |||||| Sbjct 407 CTTTGAT----GTAGGTTTCCAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATG 352 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTC--CAGATACTGCACCTCCTGTGTGAACC 160301 || ||||| ||| ||||||| ||||| | | | || | |||| |||| | Sbjct 351 GCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGGCGGCT--TGGATTTCCTTCATGAAGC 294 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | || || | ||| | ||||||| ||| |||||||| || | ||||| | Sbjct 293 GGGCGGCGAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAAGAAGGCGAGGACGTGGG 234 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 |||||| | | |||| | | | |||| |||||||| | |||||||| | Sbjct 233 TGATGAAGTAGCGCTCGCCGTCGGTGAG---GGAGTCCCAGTGGCGGAGGTCTTGGGAAA 177 Query 160422 AATCAACCTCTTCCGCGCTCCA 160443 |||||||||||| ||| |||| Sbjct 176 GATCAACCTCTTCGGCGGTCCA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792928417559600