Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq78764 98.7 1e-15 seq54380 96.9 4e-15 seq67758 95.1 1e-14 seq39107 89.7 6e-13 >seq78764 Length=1181 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 46405 CTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 46464 ||| ||||| |||||||||| || ||||| | || ||||||||||| |||||||| || Sbjct 416 CTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGAT 357 Query 46465 CAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGC 46524 | |||||||| || | ||| | | |||||||||| |||||| ||| | | | Sbjct 356 GAGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTATC 297 Query 46525 CACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 | ||||| || || || || | || ||||| || ||||| || ||||| || || Sbjct 296 GATTGTGTCCGAAGACTCAACCTCAAGGGTAATGGTCTTCCCCGTAAGGGTTTTCACGAA 237 Query 46585 GATTTGCAT 46593 || ||||| Sbjct 236 TATCTGCAT 228 >seq54380 Length=3212 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 2197 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 2138 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 || | |||||||| || | ||| | | |||||||||| |||||| Sbjct 2137 GATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTT 2090 >seq67758 Length=6344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||||||| | || |||||| ||||| ||||| || | Sbjct 4667 CCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 4608 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||| |||||||| ||||| ||||||||||| | || Sbjct 4607 AGGGTGCGGCCATCCTCCAGTTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 4548 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 46542 | | ||||||||| ||||| ||| | ||| | | | |||||| ||| || Sbjct 4547 ATCCCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAACTC---TC 4492 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | || ||||| || || |||| || || || ||||||||||| Sbjct 4491 CACCTCGAGAGTTATGGTCTTACCGGTCAAGGTCTTGACGAAGATTTGCAT 4441 >seq39107 Length=55737 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || ||||| | ||||| || | || ||||||||| || ||||| || | Sbjct 26325 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 26266 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | |||| || || || || || ||||| ||||| | |||||| || | | Sbjct 26265 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 26206 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || |||||| |||||| ||| | | | | || || ||||||| Sbjct 26205 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 26146 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| ||||| || |||| ||||| || ||||||||||| Sbjct 26145 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || ||||| | ||||| || | || ||||||||| || ||||| || | Sbjct 29648 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 29589 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | |||| || || || || || ||||| ||||| | |||||| || | | Sbjct 29588 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 29529 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || |||||| |||||| ||| | | | | || || ||||||| Sbjct 29528 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 29469 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| ||||| || |||| ||||| || ||||||||||| Sbjct 29468 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || ||||| | ||||| || | || ||||||||| || ||||| || | Sbjct 46579 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 46520 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | |||| || || || || || ||||| ||||| | |||||| || | | Sbjct 46519 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 46460 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || |||||| |||||| ||| | | | | || || ||||||| Sbjct 46459 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 46400 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| ||||| || |||| ||||| || ||||||||||| Sbjct 46399 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563655485188200