Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq78764 98.7 1e-15
seq54380 96.9 4e-15
seq67758 95.1 1e-14
seq39107 89.7 6e-13
>seq78764
Length=1181
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 46405 CTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 46464
||| ||||| |||||||||| || ||||| | || ||||||||||| |||||||| ||
Sbjct 416 CTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGAT 357
Query 46465 CAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGC 46524
| |||||||| || | ||| | | |||||||||| |||||| ||| | | |
Sbjct 356 GAGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTATC 297
Query 46525 CACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584
| ||||| || || || || | || ||||| || ||||| || ||||| || ||
Sbjct 296 GATTGTGTCCGAAGACTCAACCTCAAGGGTAATGGTCTTCCCCGTAAGGGTTTTCACGAA 237
Query 46585 GATTTGCAT 46593
|| |||||
Sbjct 236 TATCTGCAT 228
>seq54380
Length=3212
Score = 96.9 bits (106), Expect = 4e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || ||||| |||| ||||||||||| ||||||||
Sbjct 2197 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 2138
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|| | |||||||| || | ||| | | |||||||||| ||||||
Sbjct 2137 GATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTT 2090
>seq67758
Length=6344
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | |||||||| | || |||||| ||||| ||||| || |
Sbjct 4667 CCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 4608
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| | || || || ||||| |||||||| ||||| ||||||||||| | ||
Sbjct 4607 AGGGTGCGGCCATCCTCCAGTTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 4548
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 46542
| | ||||||||| ||||| ||| | ||| | | | |||||| ||| ||
Sbjct 4547 ATCCCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAACTC---TC 4492
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || | || ||||| || || |||| || || || |||||||||||
Sbjct 4491 CACCTCGAGAGTTATGGTCTTACCGGTCAAGGTCTTGACGAAGATTTGCAT 4441
>seq39107
Length=55737
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || ||||| | ||||| || | || ||||||||| || ||||| || |
Sbjct 26325 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 26266
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| || | |||| || || || || || ||||| ||||| | |||||| || | |
Sbjct 26265 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 26206
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | || |||||| |||||| ||| | | | | || || |||||||
Sbjct 26205 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 26146
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| ||||| ||||| || |||| ||||| || |||||||||||
Sbjct 26145 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || ||||| | ||||| || | || ||||||||| || ||||| || |
Sbjct 29648 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 29589
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| || | |||| || || || || || ||||| ||||| | |||||| || | |
Sbjct 29588 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 29529
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | || |||||| |||||| ||| | | | | || || |||||||
Sbjct 29528 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 29469
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| ||||| ||||| || |||| ||||| || |||||||||||
Sbjct 29468 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || ||||| | ||||| || | || ||||||||| || ||||| || |
Sbjct 46579 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 46520
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| || | |||| || || || || || ||||| ||||| | |||||| || | |
Sbjct 46519 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 46460
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | || |||||| |||||| ||| | | | | || || |||||||
Sbjct 46459 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 46400
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| ||||| ||||| || |||| ||||| || |||||||||||
Sbjct 46399 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563655485188200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |