Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq44648 100 2e-16
seq39107 89.7 4e-13
>seq44648
Length=6574
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||||| ||| | || | ||| ||||| || || || ||||| ||
Sbjct 5766 GCCACCACGAAGACGCAATACGAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGC 5707
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
| | | |||| |||||||| ||||| |||| || || | ||||||||| | ||
Sbjct 5706 AAGAGTCCTACCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 5647
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| ||||| ||||| |||||| || | | | | ||| |||| |||||| ||
Sbjct 5646 GATTCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTATCAATTGTATCTGAGCTTTCAAC 5587
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||||||| || || || || |||||||| || || |||||||||||
Sbjct 5586 CTCCAAAGTTATAGTCTTTCCTGTTAAAGTCTTCACAAAGATCTGCAT 5539
>seq39107
Length=55737
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| || || || || || || ||||| ||| |||| |||||||||||||| ||||
Sbjct 26972 TTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAA 26913
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
||| | | ||||||||| | || | ||| || ||||| || ||| ||| | |
Sbjct 26912 AATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 26853
Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | ||| || | ||| ||||| ||||| ||||| || || || || | ||| || ||
Sbjct 26852 ATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCAC 26793
Query 39708 GAAGATCTGCAT 39719
|| ||||||||
Sbjct 26792 AAATATCTGCAT 26781
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| || || || || || || ||||| ||| |||| |||||||||||||| ||||
Sbjct 30295 TTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAA 30236
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
||| | | ||||||||| | || | ||| || ||||| || ||| ||| | |
Sbjct 30235 AATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCTTTCACATT 30176
Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | ||| || | ||| ||||| ||||| ||||| || || || || | ||| || ||
Sbjct 30175 ATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCAC 30116
Query 39708 GAAGATCTGCAT 39719
|| ||||||||
Sbjct 30115 AAATATCTGCAT 30104
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| || || || || || || ||||| ||| |||| |||||||||||||| ||||
Sbjct 41809 TTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAA 41750
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
||| | | ||||||||| | || | ||| || ||||| || ||| ||| | |
Sbjct 41749 AATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 41690
Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | ||| || | ||| ||||| ||||| ||||| || || || || | ||| || ||
Sbjct 41689 ATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCAC 41630
Query 39708 GAAGATCTGCAT 39719
|| ||||||||
Sbjct 41629 AAATATCTGCAT 41618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346421132817155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |