Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq205188 122 1e-22 seq222699 102 1e-16 seq66610 84.2 3e-11 >seq205188 Length=846 Score = 122 bits (134), Expect = 1e-22 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || |||||||| || || |||| ||||| |||||||| || Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| ||||||| ||||| ||||| || |||||||| ||||| || ||| Sbjct 61 CGTTTCTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAG 120 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || || |||| | ||||| || || | |||| || ||||| ||| ||| ||||| Sbjct 121 GCAAATGCGACGATGCGCTCGGCGAAGGAGTCG-GAAGAGTCGATCCAGCGGAGGGCCCA 179 Query 119687 GTTGGCCTT 119695 ||||||||| Sbjct 180 GTTGGCCTT 188 >seq222699 Length=2956 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 |||||||||||||| || || ||||| || || |||| || || ||||| | || Sbjct 654 TGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCCG 595 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||||||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 594 CGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAG 535 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| ||||| Sbjct 534 GCGAAGGCGACGAGGCGCTCGGCAAA 509 >seq66610 Length=5604 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 237 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587326609523000