Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 241 2e-58
seq95291 219 5e-52
seq13836 127 2e-24
seq152218 107 2e-18
seq32149 107 2e-18
seq55772 95.1 1e-14
seq78999 91.5 2e-13
>seq80997
Length=4773
Score = 241 bits (266), Expect = 2e-58
Identities = 326/449 (73%), Gaps = 4/449 (1%)
Strand=Plus/Plus
Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798
|||| | |||||| | ||| ||||| ||| | || || || || | || |||||
Sbjct 4327 TGGGGTCGCTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTT 4386
Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857
|| ||| |||||||||| ||| | ||| | |||||| |||| || || |||| || ||
Sbjct 4387 GGTGTTTTGATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTAT 4445
Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917
|||||| || || || || || ||||| || ||||| || || |||| || || | ||
Sbjct 4446 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTA 4505
Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977
||| ||||| ||||| |||||||| || ||||| |||| || || ||| | || ||
Sbjct 4506 TGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 4565
Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037
||||| ||||||||||| || || |||| |||||| | || ||||| ||||||| |
Sbjct 4566 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 4625
Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097
||| | || | |||||| | |||| | | ||||||||||||||||||||||||
Sbjct 4626 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 4685
Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156
| || ||| |||||||||| || ||||| ||| || ||||||| |||| || | |
Sbjct 4686 TAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTTAGCTCTTGTTGTAG 4744
Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCT 180185
| || || |||| ||| | ||||||||
Sbjct 4745 CCGCTACTACTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 219 bits (242), Expect = 5e-52
Identities = 299/412 (73%), Gaps = 4/412 (1%)
Strand=Plus/Minus
Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798
|||| | ||||||| | ||| ||||| | | | || || || || | || |||||
Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011
Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857
| ||| |||||||||| ||| | ||| | |||| | |||| || || |||| || ||
Sbjct 6010 GATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTAT 5952
Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917
|||||| || || || || || ||||| || ||||| | || |||| || || | ||
Sbjct 5951 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTA 5892
Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977
||| ||||| ||||| | |||||| || ||||| |||| || || ||| | || ||
Sbjct 5891 TGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 5832
Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037
||||| ||||||||||| || || |||| |||||| | || ||||| ||||||| |
Sbjct 5831 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 5772
Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097
||| | || | |||||| | |||| | | ||||||||||||||||||||||||
Sbjct 5771 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 5712
Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCC 180148
| || ||| |||||||||| || ||||| ||| || |||||||| |||||
Sbjct 5711 TAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 127 bits (140), Expect = 2e-24
Identities = 148/197 (75%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 181703 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTC 181762
|| || || ||| ||||||| || |||||||| || |||| | || || || ||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 181763 AGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTC 181821
| ||||||||||||||||| ||| || | | ||||| || ||||| | || || ||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCA-ATTGCGACCTTATAATGCAACCGCATTCTC 4588
Query 181822 CGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTG 181881
||||| |||||||| || || | |||||| || || ||||| ||||| || || ||||
Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648
Query 181882 GTTCTTTGCGCCGAGTT 181898
||||||||| || ||||
Sbjct 4649 GTTCTTTGCTCCAAGTT 4665
>seq152218
Length=324
Score = 107 bits (118), Expect = 2e-18
Identities = 131/176 (74%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966
|||| || |||||||| || ||| ||||| ||| || || ||| | || ||||| |
Sbjct 273 TTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGTGCTT 214
Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCT-TTC 172025
| || |||| |||| ||| ||| |||||| || || || |||||||| |||| |||
Sbjct 213 GCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAGCTTC 155
Query 172026 CTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081
|||||||| || ||||| | |||||| ||||| ||||| |||||||| || ||
Sbjct 154 CTTGATGACGACCAAATCGGTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCAC 99
>seq32149
Length=26709
Score = 107 bits (118), Expect = 2e-18
Identities = 131/176 (74%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966
|||| || |||||||| || ||| ||||| ||| || || ||| | || ||||| |
Sbjct 21034 TTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGTGCTT 20975
Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCT-TTC 172025
| || |||| |||| ||| ||| |||||| || || || |||||||| |||| |||
Sbjct 20974 GCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAGCTTC 20916
Query 172026 CTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081
|||||||| || ||||| | |||||| ||||| ||||| |||||||| || ||
Sbjct 20915 CTTGATGACGACCAAATCGGTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCAC 20860
>seq55772
Length=6464
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966
|||| || || ||||| || || || ||||| ||| || || ||||| ||||| || |
Sbjct 1364 TTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGAGCAT 1305
Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026
| || | ||||||||| || ||| |||| | || |||||||| || || ||||
Sbjct 1304 GCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCATTCC 1245
Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCG 172086
||||||| ||||||| | |||||| | || |||||||| | ||||| || |
Sbjct 1244 TTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACTGCAG 1185
Query 172087 ATTGTGT 172093
|||||||
Sbjct 1184 ATTGTGT 1178
Score = 89.7 bits (98), Expect = 6e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966
|||| || || ||||| || || || ||||| ||| || || ||||| ||||| || |
Sbjct 3832 TTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGAGCAT 3773
Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026
| || | ||||||||| || ||| |||| | | |||||||| || || ||||
Sbjct 3772 GCTCTACCTGTGCTGGGAAGATTGTATCTGGTTCATTGGATCAGTCTGATGGCTCATTCC 3713
Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCG 172086
||||||| ||||||| | |||||| | || |||||||| | ||||| || |
Sbjct 3712 TTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACTGCAG 3653
Query 172087 ATTGTGT 172093
|||||||
Sbjct 3652 ATTGTGT 3646
>seq78999
Length=659
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 182129 AACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTC 182188
|| ||||| ||||| | ||||| |||| || |||||| | ||||| | || |
Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT-C 263
Query 182189 TTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTT 182248
| |||| | ||||| || || | ||| | ||| | | | | || | || || |
Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203
Query 182249 GCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCA 182308
|| || ||||| ||||||||||||||||| || ||||||| | | | ||||||| ||
Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCT 143
Query 182309 GAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTG 182360
| || ||||| |||||||| || | ||| |||| || |||||| | ||||
Sbjct 142 TA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTG 92
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608687421911400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |