Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq80997 241 2e-58 seq95291 219 5e-52 seq13836 127 2e-24 seq152218 107 2e-18 seq32149 107 2e-18 seq55772 95.1 1e-14 seq78999 91.5 2e-13 >seq80997 Length=4773 Score = 241 bits (266), Expect = 2e-58 Identities = 326/449 (73%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| ||| | || || || || | || ||||| Sbjct 4327 TGGGGTCGCTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTT 4386 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| |||||||||| ||| | ||| | |||||| |||| || || |||| || || Sbjct 4387 GGTGTTTTGATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTAT 4445 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||| || || || || || ||||| || ||||| || || |||| || || | || Sbjct 4446 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTA 4505 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| ||||| |||||||| || ||||| |||| || || ||| | || || Sbjct 4506 TGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 4565 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 ||||| ||||||||||| || || |||| |||||| | || ||||| ||||||| | Sbjct 4566 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 4625 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 ||| | || | |||||| | |||| | | |||||||||||||||||||||||| Sbjct 4626 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 4685 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || ||| |||||||||| || ||||| ||| || ||||||| |||| || | | Sbjct 4686 TAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTTAGCTCTTGTTGTAG 4744 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCT 180185 | || || |||| ||| | |||||||| Sbjct 4745 CCGCTACTACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 219 bits (242), Expect = 5e-52 Identities = 299/412 (73%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | ||||||| | ||| ||||| | | | || || || || | || ||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 | ||| |||||||||| ||| | ||| | |||| | |||| || || |||| || || Sbjct 6010 GATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTAT 5952 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||| || || || || || ||||| || ||||| | || |||| || || | || Sbjct 5951 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTA 5892 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| ||||| | |||||| || ||||| |||| || || ||| | || || Sbjct 5891 TGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 5832 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 ||||| ||||||||||| || || |||| |||||| | || ||||| ||||||| | Sbjct 5831 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 5772 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 ||| | || | |||||| | |||| | | |||||||||||||||||||||||| Sbjct 5771 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 5712 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCC 180148 | || ||| |||||||||| || ||||| ||| || |||||||| ||||| Sbjct 5711 TAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 127 bits (140), Expect = 2e-24 Identities = 148/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 181703 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTC 181762 || || || ||| ||||||| || |||||||| || |||| | || || || ||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 181763 AGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTC 181821 | ||||||||||||||||| ||| || | | ||||| || ||||| | || || || Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCA-ATTGCGACCTTATAATGCAACCGCATTCTC 4588 Query 181822 CGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTG 181881 ||||| |||||||| || || | |||||| || || ||||| ||||| || || |||| Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 181882 GTTCTTTGCGCCGAGTT 181898 ||||||||| || |||| Sbjct 4649 GTTCTTTGCTCCAAGTT 4665 >seq152218 Length=324 Score = 107 bits (118), Expect = 2e-18 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| || |||||||| || ||| ||||| ||| || || ||| | || ||||| | Sbjct 273 TTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGTGCTT 214 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCT-TTC 172025 | || |||| |||| ||| ||| |||||| || || || |||||||| |||| ||| Sbjct 213 GCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAGCTTC 155 Query 172026 CTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || ||||| | |||||| ||||| ||||| |||||||| || || Sbjct 154 CTTGATGACGACCAAATCGGTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCAC 99 >seq32149 Length=26709 Score = 107 bits (118), Expect = 2e-18 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| || |||||||| || ||| ||||| ||| || || ||| | || ||||| | Sbjct 21034 TTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGTGCTT 20975 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCT-TTC 172025 | || |||| |||| ||| ||| |||||| || || || |||||||| |||| ||| Sbjct 20974 GCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAGCTTC 20916 Query 172026 CTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || ||||| | |||||| ||||| ||||| |||||||| || || Sbjct 20915 CTTGATGACGACCAAATCGGTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCAC 20860 >seq55772 Length=6464 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| || || ||||| || || || ||||| ||| || || ||||| ||||| || | Sbjct 1364 TTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGAGCAT 1305 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 | || | ||||||||| || ||| |||| | || |||||||| || || |||| Sbjct 1304 GCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCATTCC 1245 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCG 172086 ||||||| ||||||| | |||||| | || |||||||| | ||||| || | Sbjct 1244 TTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACTGCAG 1185 Query 172087 ATTGTGT 172093 ||||||| Sbjct 1184 ATTGTGT 1178 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| || || ||||| || || || ||||| ||| || || ||||| ||||| || | Sbjct 3832 TTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGAGCAT 3773 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 | || | ||||||||| || ||| |||| | | |||||||| || || |||| Sbjct 3772 GCTCTACCTGTGCTGGGAAGATTGTATCTGGTTCATTGGATCAGTCTGATGGCTCATTCC 3713 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCG 172086 ||||||| ||||||| | |||||| | || |||||||| | ||||| || | Sbjct 3712 TTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACTGCAG 3653 Query 172087 ATTGTGT 172093 ||||||| Sbjct 3652 ATTGTGT 3646 >seq78999 Length=659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 182129 AACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTC 182188 || ||||| ||||| | ||||| |||| || |||||| | ||||| | || | Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT-C 263 Query 182189 TTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTT 182248 | |||| | ||||| || || | ||| | ||| | | | | || | || || | Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203 Query 182249 GCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCA 182308 || || ||||| ||||||||||||||||| || ||||||| | | | ||||||| || Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCT 143 Query 182309 GAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTG 182360 | || ||||| |||||||| || | ||| |||| || |||||| | |||| Sbjct 142 TA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTG 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608687421911400