Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq80997 143 3e-29 seq213462 129 7e-25 seq43961 129 7e-25 seq95291 127 2e-24 seq217609 113 5e-20 >seq80997 Length=4773 Score = 143 bits (158), Expect = 3e-29 Identities = 245/353 (69%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | |||||||| ||| | || ||| | | ||| || || Sbjct 4376 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATT 4434 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || || || || || ||||| || ||||| || || || | || || || | || Sbjct 4435 ATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 4494 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | ||||| ||||| ||||| |||||||| || |||| | || ||||| Sbjct 4495 TCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATA 4554 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || || || |||||||||||||| |||||||||| ||||| || || || Sbjct 4555 GGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGC 4614 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | |||||| | ||||| | | |||||||| | Sbjct 4615 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGT 4674 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATA 169793 |||||||||| | | | || |||||||||||||| ||||||||| Sbjct 4675 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 4727 >seq213462 Length=1170 Score = 129 bits (142), Expect = 7e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || |||||||| |||| ||||| ||||||||||||||||| || ||||| || ||| || Sbjct 1101 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 1042 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||| ||||| | ||| || || ||||| | | |||||| || ||| | | Sbjct 1041 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 984 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || | || | || | ||| | || ||||| ||||||||||||||||| ||||| | Sbjct 983 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 924 Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972 | ||||| ||||| ||||| || |||| Sbjct 923 CTACCAGCAACATTTGCACTGCCCAGG 897 >seq43961 Length=9750 Score = 129 bits (142), Expect = 7e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || |||||||| |||| ||||| ||||||||||||||||| || ||||| || ||| || Sbjct 7004 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 6945 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||| ||||| | ||| || || ||||| | | |||||| || ||| | | Sbjct 6944 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 6887 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || | || | || | ||| | || ||||| ||||||||||||||||| ||||| | Sbjct 6886 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 6827 Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972 | ||||| ||||| ||||| || |||| Sbjct 6826 CTACCAGCAACATTTGCACTGCCCAGG 6800 >seq95291 Length=6073 Score = 127 bits (140), Expect = 2e-24 Identities = 247/362 (68%), Gaps = 2/362 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| ||||||| |||| | |||||||| ||| | || ||| | ||| || || Sbjct 6021 TTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAATTC-TGTATTTATT 5963 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || || || || || ||||| || ||||| || || || | || | || | || Sbjct 5962 ATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGA 5903 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | ||||| ||||| ||||| | |||||| || |||| | || ||||| Sbjct 5902 TCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATA 5843 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || || || |||||||||||||| |||||||||| ||||| || || || Sbjct 5842 GGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGC 5783 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | |||||| | ||||| | | |||||||| | Sbjct 5782 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGT 5723 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | || |||||||||||||| ||||||||| || || Sbjct 5722 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 5663 Query 169801 CC 169802 || Sbjct 5662 CC 5661 >seq217609 Length=1529 Score = 113 bits (124), Expect = 5e-20 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| || || || |||||||| |||| ||||| ||||| ||||| ||| Sbjct 1290 GATATTGTTGTTGGGTCTACTCAGAGGTTTGGGGTTCCAATGGGTTATGGGGGTCCACAT 1231 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 153865 ||||| ||| | || ||| || | ||||||| || | | ||||| || || | || Sbjct 1230 GCTGCGTTCCTGGCCACATCACAAGAGTATAAAAGGTTGGTGCCTGGAAGGATCATTGGG 1171 Query 153866 -TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 ||||| || ||| | || || || | |||| | || | || ||||| |||| Sbjct 1170 CTCAGT--GTTGATTCTTGTGGAAAGTCGGCTTTCAGAATGGCCTTGCAAACTAGGGAGC 1113 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 |||||||| | || ||||| || ||||| ||||| ||||| ||||||| Sbjct 1112 AGCATATCCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGG 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577590750754400