Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 143 3e-29
seq213462 129 7e-25
seq43961 129 7e-25
seq95291 127 2e-24
seq217609 113 5e-20
>seq80997
Length=4773
Score = 143 bits (158), Expect = 3e-29
Identities = 245/353 (69%), Gaps = 2/353 (1%)
Strand=Plus/Plus
Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500
|||| |||||||||||| | |||||||| ||| | || ||| | | ||| || ||
Sbjct 4376 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATT 4434
Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560
| || || || || || ||||| || ||||| || || || | || || || | ||
Sbjct 4435 ATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 4494
Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620
||| | | ||||| ||||| ||||| |||||||| || |||| | || |||||
Sbjct 4495 TCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATA 4554
Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680
|| | || || || || |||||||||||||| |||||||||| ||||| || || ||
Sbjct 4555 GGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGC 4614
Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740
||||||||| | | | | | |||||| | ||||| | | |||||||| |
Sbjct 4615 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGT 4674
Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATA 169793
|||||||||| | | | || |||||||||||||| |||||||||
Sbjct 4675 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 4727
>seq213462
Length=1170
Score = 129 bits (142), Expect = 7e-25
Identities = 154/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
|| |||||||| |||| ||||| ||||||||||||||||| || ||||| || ||| ||
Sbjct 1101 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 1042
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885
| |||| ||||| | ||| || || ||||| | | |||||| || ||| | |
Sbjct 1041 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 984
Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945
| || | || | || | ||| | || ||||| ||||||||||||||||| ||||| |
Sbjct 983 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 924
Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972
| ||||| ||||| ||||| || ||||
Sbjct 923 CTACCAGCAACATTTGCACTGCCCAGG 897
>seq43961
Length=9750
Score = 129 bits (142), Expect = 7e-25
Identities = 154/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
|| |||||||| |||| ||||| ||||||||||||||||| || ||||| || ||| ||
Sbjct 7004 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 6945
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885
| |||| ||||| | ||| || || ||||| | | |||||| || ||| | |
Sbjct 6944 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 6887
Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945
| || | || | || | ||| | || ||||| ||||||||||||||||| ||||| |
Sbjct 6886 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 6827
Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972
| ||||| ||||| ||||| || ||||
Sbjct 6826 CTACCAGCAACATTTGCACTGCCCAGG 6800
>seq95291
Length=6073
Score = 127 bits (140), Expect = 2e-24
Identities = 247/362 (68%), Gaps = 2/362 (1%)
Strand=Plus/Minus
Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500
|||| ||||||| |||| | |||||||| ||| | || ||| | ||| || ||
Sbjct 6021 TTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAATTC-TGTATTTATT 5963
Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560
| || || || || || ||||| || ||||| || || || | || | || | ||
Sbjct 5962 ATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGA 5903
Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620
||| | | ||||| ||||| ||||| | |||||| || |||| | || |||||
Sbjct 5902 TCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATA 5843
Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680
|| | || || || || |||||||||||||| |||||||||| ||||| || || ||
Sbjct 5842 GGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGC 5783
Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740
||||||||| | | | | | |||||| | ||||| | | |||||||| |
Sbjct 5782 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGT 5723
Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800
|||||||||| | | | || |||||||||||||| ||||||||| || ||
Sbjct 5722 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 5663
Query 169801 CC 169802
||
Sbjct 5662 CC 5661
>seq217609
Length=1529
Score = 113 bits (124), Expect = 5e-20
Identities = 163/228 (71%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||| ||| || || || |||||||| |||| ||||| ||||| ||||| |||
Sbjct 1290 GATATTGTTGTTGGGTCTACTCAGAGGTTTGGGGTTCCAATGGGTTATGGGGGTCCACAT 1231
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 153865
||||| ||| | || ||| || | ||||||| || | | ||||| || || | ||
Sbjct 1230 GCTGCGTTCCTGGCCACATCACAAGAGTATAAAAGGTTGGTGCCTGGAAGGATCATTGGG 1171
Query 153866 -TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
||||| || ||| | || || || | |||| | || | || ||||| ||||
Sbjct 1170 CTCAGT--GTTGATTCTTGTGGAAAGTCGGCTTTCAGAATGGCCTTGCAAACTAGGGAGC 1113
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972
|||||||| | || ||||| || ||||| ||||| ||||| |||||||
Sbjct 1112 AGCATATCCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGG 1065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577590750754400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |