Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq80997 217 2e-51 seq95291 201 1e-46 seq13836 123 3e-23 seq78999 84.2 3e-11 >seq80997 Length=4773 Score = 217 bits (240), Expect = 2e-51 Identities = 291/396 (73%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||||| | ||| |||| | || | || || || || || | || ||||| || || | Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAA-AATCGTCTTTACATTGGATGGTTTGGTGTTTT 4394 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||||||| ||| | ||| | |||||| ||||| || || |||| || ||||||| | Sbjct 4395 GATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || ||||| || || |||| || || | ||||| |||| Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | ||||| |||||||| || | ||| ||||| ||||| || | || || ||||| | Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 ||||||||||||| || | ||||||||||| || ||||| ||||||| ||||| | | Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633 Query 168161 TCTTTCACTTCCTCATCG--GTATCTATGCATACATGGGACGTGAATGGGAACTTTCATA 168218 | | |||||| | | | ||| || ||| |||||||| ||||| ||||||||| | Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTT 4691 Query 168219 TCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATA 168254 |||| | ||||||||||| ||||| ||||||||| Sbjct 4692 TCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 4727 >seq95291 Length=6073 Score = 201 bits (222), Expect = 1e-46 Identities = 293/405 (72%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||||| | ||| |||| | || | || || || || || | || ||||| | || | Sbjct 6061 TTCTGTAATTGGATAACCAACATCGAA-AATCGTCTTTACATTGGATGGTTTGATGTTTT 6003 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||||||| ||| | ||| | |||| | ||||| || || |||| || ||||||| | Sbjct 6002 GATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 5944 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || ||||| | || |||| || || | ||||| |||| Sbjct 5943 CTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACA 5884 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | ||||| | |||||| || | ||| ||||| ||||| || | || || ||||| | Sbjct 5883 ATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 5824 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 ||||||||||||| || | ||||||||||| || ||||| ||||||| ||||| | | Sbjct 5823 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 5764 Query 168161 TCTTTCACTTCCTCATCGGTAT--CTATGCATACATGGGACGTGAATGGGAACTTTCATA 168218 | | |||||| | | ||| | || ||| |||||||| ||||| ||||||||| | Sbjct 5763 TTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTT 5706 Query 168219 TCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACC 168263 |||| | ||||||||||| ||||| ||||||||| || || || Sbjct 5705 TCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 123 bits (136), Expect = 3e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 169576 GTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGG 169635 |||||| || || ||||| |||| ||||| || || || ||||| || | ||| || || Sbjct 4460 GTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGG 4519 Query 169636 TTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTAT 169695 |||||| | | || |||||| | || || | || | || ||||||||||| | Sbjct 4520 GTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAC 4579 Query 169696 TGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACA 169755 |||||||| ||||| |||||||| ||||| ||| || ||||| || ||||| || || Sbjct 4580 CGCATTCTCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCA 4639 Query 169756 GTCCTCATGGTTCTTTGCTCC 169776 ||| |||||||||||||| Sbjct 4640 GTCTGGTTGGTTCTTTGCTCC 4660 >seq78999 Length=659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 170012 AACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTT 170071 || ||||| ||||| | ||||| |||| || | || || ||||| | | || | Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTTCT 262 Query 170072 TTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA-CATCCTCTATTGGCATTATTGGCCT 170130 | ||||| ||||| || || | ||| | ||| ||| || |||| | || | | Sbjct 261 GT-ATGTTATTTGTACCAGTAACTGGTTTACGGATCATTA-CTTTTGGGGTAGTTAGTTT 204 Query 170131 TGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCC 170190 || || || || |||||||| || || || | | || || | | |||||||||||| Sbjct 203 GGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC 144 Query 170191 AGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTT 170250 | |||||||| ||||||||||||| || | || || ||||| |||||| ||| | Sbjct 143 TTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGAT 85 Query 170251 GGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304 || | | ||| | | ||||||||| | || ||| | |||| ||||| || Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572864822587800