Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015281.1
Length=179563
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 217 2e-51
seq95291 201 1e-46
seq13836 123 3e-23
seq78999 84.2 3e-11
>seq80997
Length=4773
Score = 217 bits (240), Expect = 2e-51
Identities = 291/396 (73%), Gaps = 8/396 (2%)
Strand=Plus/Plus
Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921
||||| | ||| |||| | || | || || || || || | || ||||| || || |
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAA-AATCGTCTTTACATTGGATGGTTTGGTGTTTT 4394
Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980
||||||||| ||| | ||| | |||||| ||||| || || |||| || ||||||| |
Sbjct 4395 GATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453
Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040
| || || || || || || || ||||| || || |||| || || | ||||| ||||
Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513
Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100
| ||||| |||||||| || | ||| ||||| ||||| || | || || ||||| |
Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573
Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160
||||||||||||| || | ||||||||||| || ||||| ||||||| ||||| | |
Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633
Query 168161 TCTTTCACTTCCTCATCG--GTATCTATGCATACATGGGACGTGAATGGGAACTTTCATA 168218
| | |||||| | | | ||| || ||| |||||||| ||||| ||||||||| |
Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTT 4691
Query 168219 TCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATA 168254
|||| | ||||||||||| ||||| |||||||||
Sbjct 4692 TCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 4727
>seq95291
Length=6073
Score = 201 bits (222), Expect = 1e-46
Identities = 293/405 (72%), Gaps = 8/405 (2%)
Strand=Plus/Minus
Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921
||||| | ||| |||| | || | || || || || || | || ||||| | || |
Sbjct 6061 TTCTGTAATTGGATAACCAACATCGAA-AATCGTCTTTACATTGGATGGTTTGATGTTTT 6003
Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980
||||||||| ||| | ||| | |||| | ||||| || || |||| || ||||||| |
Sbjct 6002 GATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 5944
Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040
| || || || || || || || ||||| | || |||| || || | ||||| ||||
Sbjct 5943 CTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACA 5884
Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100
| ||||| | |||||| || | ||| ||||| ||||| || | || || ||||| |
Sbjct 5883 ATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 5824
Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160
||||||||||||| || | ||||||||||| || ||||| ||||||| ||||| | |
Sbjct 5823 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 5764
Query 168161 TCTTTCACTTCCTCATCGGTAT--CTATGCATACATGGGACGTGAATGGGAACTTTCATA 168218
| | |||||| | | ||| | || ||| |||||||| ||||| ||||||||| |
Sbjct 5763 TTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTT 5706
Query 168219 TCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACC 168263
|||| | ||||||||||| ||||| ||||||||| || || ||
Sbjct 5705 TCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 123 bits (136), Expect = 3e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 169576 GTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGG 169635
|||||| || || ||||| |||| ||||| || || || ||||| || | ||| || ||
Sbjct 4460 GTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGG 4519
Query 169636 TTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTAT 169695
|||||| | | || |||||| | || || | || | || ||||||||||| |
Sbjct 4520 GTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAC 4579
Query 169696 TGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACA 169755
|||||||| ||||| |||||||| ||||| ||| || ||||| || ||||| || ||
Sbjct 4580 CGCATTCTCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCA 4639
Query 169756 GTCCTCATGGTTCTTTGCTCC 169776
||| ||||||||||||||
Sbjct 4640 GTCTGGTTGGTTCTTTGCTCC 4660
>seq78999
Length=659
Score = 84.2 bits (92), Expect = 3e-11
Identities = 198/294 (67%), Gaps = 4/294 (1%)
Strand=Plus/Minus
Query 170012 AACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTT 170071
|| ||||| ||||| | ||||| |||| || | || || ||||| | | || |
Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTTCT 262
Query 170072 TTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA-CATCCTCTATTGGCATTATTGGCCT 170130
| ||||| ||||| || || | ||| | ||| ||| || |||| | || | |
Sbjct 261 GT-ATGTTATTTGTACCAGTAACTGGTTTACGGATCATTA-CTTTTGGGGTAGTTAGTTT 204
Query 170131 TGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCC 170190
|| || || || |||||||| || || || | | || || | | ||||||||||||
Sbjct 203 GGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC 144
Query 170191 AGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTT 170250
| |||||||| ||||||||||||| || | || || ||||| |||||| ||| |
Sbjct 143 TTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGAT 85
Query 170251 GGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304
|| | | ||| | | ||||||||| | || ||| | |||| ||||| ||
Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACC 31
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572864822587800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |