Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq80997 221 1e-52 seq95291 194 2e-44 seq13836 120 3e-22 seq78999 104 3e-17 seq76780 95.1 1e-14 >seq80997 Length=4773 Score = 221 bits (244), Expect = 1e-52 Identities = 301/414 (73%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACC 163871 || || || || |||| ||||| || ||| ||||||| ||||| | | | ||||| Sbjct 4363 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACT 4422 Query 163872 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 ||||| || || |||| || ||||||| || || || || || |||||||||||||| Sbjct 4423 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 4481 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 |||||| | || || || | ||||| ||||| ||||| |||||||| || |||| | Sbjct 4482 GCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTAC 4541 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || || ||| | || || || || || |||||||| || || ||||||| || Sbjct 4542 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 4601 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCG--GTATCTAT 164108 | | |||||||| ||||||| |||| | || | |||||| | | | ||| || | Sbjct 4602 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-T 4660 Query 164109 GCATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGT 164168 || ||||||||||||||||||||||| || ||||| |||||||||||||||||| | Sbjct 4661 GC-TACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 4719 Query 164169 GTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCT 164222 ||||| || | || | |||| ||| || | | || ||| || |||||||| Sbjct 4720 GTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 194 bits (214), Expect = 2e-44 Identities = 273/377 (72%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACC 163871 || || || || |||| ||||| | ||| ||||||| ||||| | | | |||| Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975 Query 163872 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 ||||| || || |||| || ||||||| || || || || || |||||||||||||| Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 | |||| | || || || | ||||| ||||| ||||| | |||||| || |||| | Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || || ||| | || || || || || |||||||| || || ||||||| || Sbjct 5855 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 5796 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTAT--CTAT 164108 | | |||||||| ||||||| |||| | || | |||||| | | ||| | || | Sbjct 5795 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-T 5737 Query 164109 GCATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGT 164168 || ||||||||||||||||||||||| || ||||| |||||||||||||||||| | Sbjct 5736 GC-TACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 5678 Query 164169 GTTGCTTACTCTGCACC 164185 ||||| || || || || Sbjct 5677 GTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 165473 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTT 165532 || || || ||| ||||||| || |||||||| ||||||| |||| || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 165533 CGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTC 165591 ||||| |||||| | || || ||| || | | || || || ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588 Query 165592 TGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTG 165651 ||||| || |||||||||||| || || || || || || |||||||| || |||| Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 165652 GTTTTTCGCTCCA 165664 ||| || |||||| Sbjct 4649 GTTCTTTGCTCCA 4661 >seq78999 Length=659 Score = 104 bits (114), Expect = 3e-17 Identities = 177/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 165938 AATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGT 165997 ||||| | ||||| | || || |||| | ||||| || || | ||| | ||| | | Sbjct 282 AATAAATGTTGGTTACGTT-CTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATT 224 Query 165998 TCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAG 166057 | | || | || || | || || ||||| ||||||||||||||||| || |||| Sbjct 223 ACTTTTGGGGTAGTTAGTTTGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAA 164 Query 166058 ATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAAT 166117 || | | ||||||||| || | ||||| || |||||||| |||| ||| |||| || Sbjct 163 ATTCGTGGAGCAGAAGATCCTTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAAC 105 Query 166118 GAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCT 166177 |||||| |||||| ||| ||| | ||| | | ||||| ||| || | ||| || Sbjct 104 GAAGGTATTCGTGGGTGGATGGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCT 45 Query 166178 GAAGAAGTTCTGCC 166191 |||| ||||| || Sbjct 44 AAAGAGGTTCTACC 31 >seq76780 Length=5561 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 165335 GGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCC 165393 || ||||||||||| ||| | || || ||||| ||| | || || |||||||| ||||| Sbjct 417 GGCTTGGCAAGTTCTTATTTAGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCCACTCC 359 Query 165394 AGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTT 165453 || | | | | || ||| | || | || ||||||||||| || || || |||| Sbjct 358 CGCTAATAGTTTAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTT 299 Query 165454 CGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGC 165513 | | ||| || | || || || ||| ||||||| || ||||||| ||||||| Sbjct 298 TACCTGTTGGTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGG 239 Query 165514 TCTAATTGGTTTCATGCTTCGTCAGTTTGAA 165544 |||| ||||||||| | ||| | |||||| Sbjct 238 ATTAATAGGTTTCATGTTACGTTAATTTGAA 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555365166905400