Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq80997 123 3e-23 seq213462 113 5e-20 seq43961 113 5e-20 seq95291 111 2e-19 seq25697 102 1e-16 seq217609 91.5 2e-13 >seq80997 Length=4773 Score = 123 bits (136), Expect = 3e-23 Identities = 269/403 (67%), Gaps = 0/403 (0%) Strand=Plus/Plus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | ||||| || ||| | || ||| | | | Sbjct 4370 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTAT 4429 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || | || || || || || ||||| || ||||| || || || | || || ||| Sbjct 4430 TTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTT 4489 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | || ||| | | ||||| ||||| ||||| |||||||| || |||| | || | Sbjct 4490 CTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGG 4549 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | |||||| | || || || || |||||||||||||| | || ||||| ||||| |||| Sbjct 4550 CTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACA 4609 Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153 | || ||||||||| | | | | | |||||| | | ||| | | ||||||| Sbjct 4610 ACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGG 4669 Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213 | | |||||||||| | | | |||||| | || ||||| ||| ||||||| Sbjct 4670 GTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 4729 Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCC 172256 ||| | ||| ||| || | |||| ||| | | ||||| Sbjct 4730 TAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCC 4772 >seq213462 Length=1170 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || |||||||| |||| ||||| || |||||||||||||| || ||||| || ||| || Sbjct 1101 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 1042 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||| ||||| | ||| || || ||||| | | |||||| || ||| | Sbjct 1041 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 984 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || | || | || | ||| | || ||||| |||||||||||||| || ||||| | Sbjct 983 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 924 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | ||||| ||||| ||||| || || Sbjct 923 CTACCAGCAACATTTGCACTGCCCA 899 >seq43961 Length=9750 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || |||||||| |||| ||||| || |||||||||||||| || ||||| || ||| || Sbjct 7004 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 6945 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||| ||||| | ||| || || ||||| | | |||||| || ||| | Sbjct 6944 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 6887 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || | || | || | ||| | || ||||| |||||||||||||| || ||||| | Sbjct 6886 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 6827 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | ||||| ||||| ||||| || || Sbjct 6826 CTACCAGCAACATTTGCACTGCCCA 6802 >seq95291 Length=6073 Score = 111 bits (122), Expect = 2e-19 Identities = 204/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || || || || || ||||| || ||||| || || || | || | ||| | || ||| Sbjct 5959 GCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCT 5900 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | | ||||| ||||| ||||| | |||||| || |||| | || || |||||| Sbjct 5899 CTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGT 5840 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || || || || |||||||||||||| | || ||||| ||||| ||||| || ||| Sbjct 5839 TTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGT 5780 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 |||||| | | | | | |||||| | | ||| | | |||||||| | || Sbjct 5779 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAG 5720 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACC 172220 |||||||| | | | |||||| | || ||||| ||| ||||||||||| || Sbjct 5719 TGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq25697 Length=5734 Score = 102 bits (112), Expect = 1e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 159663 ACAGGTAGGTCTAGCAAAACCATGT-GACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721 |||||| || || ||| ||| || | || || |||||||| |||||||| || | | Sbjct 308 ACAGGTGGGACTCACAAGCCCAGGTTGGATA-GGAGCAGATGTTTGTCATCTCAATCTCC 366 Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAG 159781 | ||||||||||| ||||| |||||||| || || |||||| | ||||||||||||||| Sbjct 367 ACAAGACATTCTGCATTCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAA 426 Query 159782 CAAAACATCTCACACCATTTGTA 159804 ||||| | |||||||| || Sbjct 427 AGAAACACTTGGCACCATTTTTA 449 >seq217609 Length=1529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||| ||| || || || |||||||| |||| ||||| || || ||||| ||| Sbjct 1290 GATATTGTTGTTGGGTCTACTCAGAGGTTTGGGGTTCCAATGGGTTATGGGGGTCCACAT 1231 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 158540 ||||| ||| | || ||| || | ||||||| || | | ||||| || || | || Sbjct 1230 GCTGCGTTCCTGGCCACATCACAAGAGTATAAAAGGTTGGTGCCTGGAAGGATCATTGGG 1171 Query 158541 -TCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599 ||||| || ||| || || || | |||| | || | || ||||| |||| Sbjct 1170 CTCAGT--GTTGATTCTTGTGGAAAGTCGGCTTTCAGAATGGCCTTGCAAACTAGGGAGC 1113 Query 158600 AGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACA 158645 |||||||| | || ||||| || ||||| ||||| ||||| || || Sbjct 1112 AGCATATCCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCA 1067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586404399367600