Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 123 3e-23
seq213462 113 5e-20
seq43961 113 5e-20
seq95291 111 2e-19
seq25697 102 1e-16
seq217609 91.5 2e-13
>seq80997
Length=4773
Score = 123 bits (136), Expect = 3e-23
Identities = 269/403 (67%), Gaps = 0/403 (0%)
Strand=Plus/Plus
Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913
|||| |||| ||||| ||||| | ||||| || ||| | || ||| | | |
Sbjct 4370 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTAT 4429
Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973
| || | || || || || || ||||| || ||||| || || || | || || |||
Sbjct 4430 TTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTT 4489
Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033
| || ||| | | ||||| ||||| ||||| |||||||| || |||| | || |
Sbjct 4490 CTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGG 4549
Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093
| |||||| | || || || || |||||||||||||| | || ||||| ||||| ||||
Sbjct 4550 CTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACA 4609
Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153
| || ||||||||| | | | | | |||||| | | ||| | | |||||||
Sbjct 4610 ACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGG 4669
Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213
| | |||||||||| | | | |||||| | || ||||| ||| |||||||
Sbjct 4670 GTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 4729
Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCC 172256
||| | ||| ||| || | |||| ||| | | |||||
Sbjct 4730 TAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCC 4772
>seq213462
Length=1170
Score = 113 bits (124), Expect = 5e-20
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|| |||||||| |||| ||||| || |||||||||||||| || ||||| || ||| ||
Sbjct 1101 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 1042
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560
| |||| ||||| | ||| || || ||||| | | |||||| || ||| |
Sbjct 1041 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 984
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || | || | || | ||| | || ||||| |||||||||||||| || ||||| |
Sbjct 983 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 924
Query 158621 CAACCAGTAACATCTGCACAGCACA 158645
| ||||| ||||| ||||| || ||
Sbjct 923 CTACCAGCAACATTTGCACTGCCCA 899
>seq43961
Length=9750
Score = 113 bits (124), Expect = 5e-20
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|| |||||||| |||| ||||| || |||||||||||||| || ||||| || ||| ||
Sbjct 7004 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 6945
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560
| |||| ||||| | ||| || || ||||| | | |||||| || ||| |
Sbjct 6944 CAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGT--GTTGATTCTACCG 6887
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || | || | || | ||| | || ||||| |||||||||||||| || ||||| |
Sbjct 6886 GCAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 6827
Query 158621 CAACCAGTAACATCTGCACAGCACA 158645
| ||||| ||||| ||||| || ||
Sbjct 6826 CTACCAGCAACATTTGCACTGCCCA 6802
>seq95291
Length=6073
Score = 111 bits (122), Expect = 2e-19
Identities = 204/299 (68%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981
|| || || || || ||||| || ||||| || || || | || | ||| | || |||
Sbjct 5959 GCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCT 5900
Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041
| | ||||| ||||| ||||| | |||||| || |||| | || || ||||||
Sbjct 5899 CTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGT 5840
Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101
| || || || || |||||||||||||| | || ||||| ||||| ||||| || |||
Sbjct 5839 TTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGT 5780
Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161
|||||| | | | | | |||||| | | ||| | | |||||||| | ||
Sbjct 5779 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAG 5720
Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACC 172220
|||||||| | | | |||||| | || ||||| ||| ||||||||||| ||
Sbjct 5719 TGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq25697
Length=5734
Score = 102 bits (112), Expect = 1e-16
Identities = 110/143 (77%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 159663 ACAGGTAGGTCTAGCAAAACCATGT-GACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721
|||||| || || ||| ||| || | || || |||||||| |||||||| || | |
Sbjct 308 ACAGGTGGGACTCACAAGCCCAGGTTGGATA-GGAGCAGATGTTTGTCATCTCAATCTCC 366
Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAG 159781
| ||||||||||| ||||| |||||||| || || |||||| | |||||||||||||||
Sbjct 367 ACAAGACATTCTGCATTCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAA 426
Query 159782 CAAAACATCTCACACCATTTGTA 159804
||||| | |||||||| ||
Sbjct 427 AGAAACACTTGGCACCATTTTTA 449
>seq217609
Length=1529
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481
|| |||| ||| || || || |||||||| |||| ||||| || || ||||| |||
Sbjct 1290 GATATTGTTGTTGGGTCTACTCAGAGGTTTGGGGTTCCAATGGGTTATGGGGGTCCACAT 1231
Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 158540
||||| ||| | || ||| || | ||||||| || | | ||||| || || | ||
Sbjct 1230 GCTGCGTTCCTGGCCACATCACAAGAGTATAAAAGGTTGGTGCCTGGAAGGATCATTGGG 1171
Query 158541 -TCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599
||||| || ||| || || || | |||| | || | || ||||| ||||
Sbjct 1170 CTCAGT--GTTGATTCTTGTGGAAAGTCGGCTTTCAGAATGGCCTTGCAAACTAGGGAGC 1113
Query 158600 AGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACA 158645
|||||||| | || ||||| || ||||| ||||| ||||| || ||
Sbjct 1112 AGCATATCCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCA 1067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 586404399367600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |