Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 206 3e-48
seq95291 172 6e-38
seq13836 125 8e-24
seq78999 86.0 7e-12
>seq80997
Length=4773
Score = 206 bits (228), Expect = 3e-48
Identities = 313/440 (71%), Gaps = 4/440 (1%)
Strand=Plus/Plus
Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444
||||| | ||| |||| ||| | || || || || | || ||||| || || ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503
|||||||| ||| | ||| | ||||| ||||| || || |||| || ||||||| ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454
Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563
|| || || || || || || ||||| || || |||| || || | ||||| |||||
Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514
Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623
||||| |||||||| || |||| |||| || || ||| | || || ||||| ||
Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574
Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683
||||||||| || || ||||||||||| | || ||||| ||||||| |||| | ||
Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634
Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743
| |||||| | | || | | ||||||||| ||||| |||||||| || ||
Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCG 4694
Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802
||| ||||||||||| ||||| ||| || ||||| | || | ||||| ||| || |
Sbjct 4695 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTA 4753
Query 162803 CAGTCTTCCTGGTCTATCCT 162822
| || ||| || ||||||||
Sbjct 4754 CTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 172 bits (190), Expect = 6e-38
Identities = 258/361 (71%), Gaps = 4/361 (1%)
Strand=Plus/Minus
Query 162427 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 162485
|| ||||| | || |||||||||| ||| | ||| | |||| ||||| || || |
Sbjct 6019 GGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTAT 5961
Query 162486 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 162545
||| || ||||||| || || || || || || || || ||||| | || |||| ||
Sbjct 5960 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATC 5901
Query 162546 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 162605
|| | ||||| ||||| ||||| | |||||| || |||| |||| || || ||
Sbjct 5900 TCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGG 5841
Query 162606 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 162665
| | || || ||||| ||||||||||| || || ||||||||||| | || ||||| ||
Sbjct 5840 TTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGG 5781
Query 162666 TCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGA 162725
||||| |||| | || | |||||| | | || | | ||||||||| |||||
Sbjct 5780 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGA 5721
Query 162726 ATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCAC 162784
|||||||| || ||||| ||||||||||| ||||| ||| || ||||| || || |
Sbjct 5720 GTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTC 5662
Query 162785 C 162785
|
Sbjct 5661 C 5661
>seq13836
Length=10167
Score = 125 bits (138), Expect = 8e-24
Identities = 145/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 163900 gggggACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT 163959
|| || || |||| |||||| || |||||||| || || | | || || |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 163960 CGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTC 164018
|| ||||||||||||||||| ||| || | | |||| || ||||| | || |||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAACCGCATTCTC 4588
Query 164019 TGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTG 164078
||||| |||||||| || ||| ||| || || || || || |||||||| || ||||
Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648
Query 164079 GTTCTTCGCTCCA 164091
|||||| ||||||
Sbjct 4649 GTTCTTTGCTCCA 4661
>seq78999
Length=659
Score = 86.0 bits (94), Expect = 7e-12
Identities = 162/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 164326 AACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTT 164385
|| ||||| ||||| | ||||| ||||| || | || || | ||| | | || |
Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTTCT 262
Query 164386 TTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA-CATCCTCTATTGGCATTATTGGCCT 164444
| ||||| ||||| || || | ||| || ||| ||| || |||| | || | |
Sbjct 261 GT-ATGTTATTTGTACCAGTAACTGGTTTACGGATCATTA-CTTTTGGGGTAGTTAGTTT 204
Query 164445 TGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCC 164504
|| || || || |||||||| || ||||| | |||| ||| | | ||||||||||||
Sbjct 203 GGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC 144
Query 164505 TGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTG 164557
| | || ||||||||||| ||||| | || || || |||||||| | ||||
Sbjct 143 TTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTG 92
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556022520857000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |