Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq80997 206 3e-48 seq95291 172 6e-38 seq13836 125 8e-24 seq78999 86.0 7e-12 >seq80997 Length=4773 Score = 206 bits (228), Expect = 3e-48 Identities = 313/440 (71%), Gaps = 4/440 (1%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 ||||| | ||| |||| ||| | || || || || | || ||||| || || || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 |||||||| ||| | ||| | ||||| ||||| || || |||| || ||||||| || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || || || || ||||| || || |||| || || | ||||| ||||| Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 ||||| |||||||| || |||| |||| || || ||| | || || ||||| || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 ||||||||| || || ||||||||||| | || ||||| ||||||| |||| | || Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | ||||||||| ||||| |||||||| || || Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCG 4694 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 ||| ||||||||||| ||||| ||| || ||||| | || | ||||| ||| || | Sbjct 4695 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTA 4753 Query 162803 CAGTCTTCCTGGTCTATCCT 162822 | || ||| || |||||||| Sbjct 4754 CTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 172 bits (190), Expect = 6e-38 Identities = 258/361 (71%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 162427 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 162485 || ||||| | || |||||||||| ||| | ||| | |||| ||||| || || | Sbjct 6019 GGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTAT 5961 Query 162486 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 162545 ||| || ||||||| || || || || || || || || ||||| | || |||| || Sbjct 5960 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATC 5901 Query 162546 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 162605 || | ||||| ||||| ||||| | |||||| || |||| |||| || || || Sbjct 5900 TCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGG 5841 Query 162606 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 162665 | | || || ||||| ||||||||||| || || ||||||||||| | || ||||| || Sbjct 5840 TTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGG 5781 Query 162666 TCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGA 162725 ||||| |||| | || | |||||| | | || | | ||||||||| ||||| Sbjct 5780 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGA 5721 Query 162726 ATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCAC 162784 |||||||| || ||||| ||||||||||| ||||| ||| || ||||| || || | Sbjct 5720 GTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTC 5662 Query 162785 C 162785 | Sbjct 5661 C 5661 >seq13836 Length=10167 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 163900 gggggACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT 163959 || || || |||| |||||| || |||||||| || || | | || || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 163960 CGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTC 164018 || ||||||||||||||||| ||| || | | |||| || ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAACCGCATTCTC 4588 Query 164019 TGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTG 164078 ||||| |||||||| || ||| ||| || || || || || |||||||| || |||| Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 164079 GTTCTTCGCTCCA 164091 |||||| |||||| Sbjct 4649 GTTCTTTGCTCCA 4661 >seq78999 Length=659 Score = 86.0 bits (94), Expect = 7e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 164326 AACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTT 164385 || ||||| ||||| | ||||| ||||| || | || || | ||| | | || | Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTTCT 262 Query 164386 TTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA-CATCCTCTATTGGCATTATTGGCCT 164444 | ||||| ||||| || || | ||| || ||| ||| || |||| | || | | Sbjct 261 GT-ATGTTATTTGTACCAGTAACTGGTTTACGGATCATTA-CTTTTGGGGTAGTTAGTTT 204 Query 164445 TGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCC 164504 || || || || |||||||| || ||||| | |||| ||| | | |||||||||||| Sbjct 203 GGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC 144 Query 164505 TGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTG 164557 | | || ||||||||||| ||||| | || || || |||||||| | |||| Sbjct 143 TTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTG 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556022520857000