Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 156 6e-33
seq95291 140 5e-28
>seq80997
Length=4773
Score = 156 bits (172), Expect = 6e-33
Identities = 257/371 (69%), Gaps = 0/371 (0%)
Strand=Plus/Plus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
|| || |||||| | ||| |||| ||||||||||| | ||||||||| | | |
Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4416
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || || |||||||| ||||| || ||||| || || ||
Sbjct 4417 GCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATT 4476
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| ||||| ||| |||| ||| || | ||||| ||||| ||||| |||||||| || |
Sbjct 4477 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATT 4536
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || || || || || || || || |||||||||||||| | |||||
Sbjct 4537 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGAT 4596
Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614
|| ||| | ||||| || || |||| |||| || | | |||||| | ||||| |
Sbjct 4597 GAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 4656
Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674
|| ||| || | ||||||||||| || | | |||||| | ||||||||
Sbjct 4657 GCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 4716
Query 215675 TGTGTTGCTTA 215685
|||||| ||
Sbjct 4717 GCTGTTGCATA 4727
>seq95291
Length=6073
Score = 140 bits (154), Expect = 5e-28
Identities = 257/377 (68%), Gaps = 0/377 (0%)
Strand=Plus/Minus
Query 215318 GACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCT 215377
|| |||||| | ||| |||| ||||||| ||| | ||||||||| | | | ||
Sbjct 6037 GAAAATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCA 5978
Query 215378 ACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGA 215437
| || || || | || || |||||||| ||||| || ||||| || || || |
Sbjct 5977 AATTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 5918
Query 215438 GAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCT 215497
|||| ||| |||| ||| || | ||||| ||||| ||||| | |||||| || | |||
Sbjct 5917 GAGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCT 5858
Query 215498 AGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAA 215557
| ||| || || || || || || || || |||||||||||||| | ||||| ||
Sbjct 5857 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 5798
Query 215558 TGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCT 215617
||| | ||||| || || |||| |||| || | | |||||| | ||||| | ||
Sbjct 5797 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 5738
Query 215618 GCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGT 215677
||| || | ||||||||||| || | | |||||| | |||||||| |
Sbjct 5737 TGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 5678
Query 215678 GTTGCTTACTCCGCACC 215694
||||| || || || ||
Sbjct 5677 GTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742995045546800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |