Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq80997 212 8e-50 seq95291 185 1e-41 seq13836 156 5e-33 seq78999 107 2e-18 >seq80997 Length=4773 Score = 212 bits (234), Expect = 8e-50 Identities = 303/421 (72%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||| | |||||||| || | || ||||||||||| ||||||| || ||| | ||| | Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4416 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| ||||| || || | ||||| | || || ||||| || ||||| || ||||| Sbjct 4417 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || || || || |||| || || | ||||| ||||| ||||| |||||||| || | Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || || ||| | || || || || ||||||||||| || || |||| Sbjct 4536 TCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGA 4595 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||||||| | || ||||| ||||||| |||| ||||| | |||||| | | || | Sbjct 4596 TGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--T 4653 Query 182114 CTACGC---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170 || || ||||||||| ||||||||||||||| || || | ||||||||||| || Sbjct 4654 GTA-GCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTG 4712 Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230 ||| ||| ||||| | |||| || | || || || |||| ||||| ||||||| Sbjct 4713 GATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCC 4772 Query 182231 T 182231 | Sbjct 4773 T 4773 >seq95291 Length=6073 Score = 185 bits (204), Expect = 1e-41 Identities = 271/378 (72%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 |||||||| || | || ||||||| ||| ||||||| || ||| | ||| | |||| Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | ||||| | || || ||||| || ||||| || ||||| || || Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 | || |||| || || | ||||| ||||| ||||| | |||||| || | || | Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | || || || || ||||||||||| || || |||||||||| Sbjct 5855 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 5796 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || ||||| ||||||| |||| ||||| | |||||| | | || | || || Sbjct 5795 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 5739 Query 182120 ---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 ||||||||| ||||||||||||||| || || | ||||||||||| ||||| Sbjct 5738 TTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGC 5679 Query 182177 TGTAGCATACTCTGCTCC 182194 ||| ||||| || ||||| Sbjct 5678 TGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 156 bits (172), Expect = 5e-33 Identities = 152/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183460 GGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTT 183519 || || || |||| |||||| || ||||||||||| || | | || || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 183520 CGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCT 183579 || || |||||||||||||| | || | || ||||| ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCATTCTCA 4589 Query 183580 GGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGG 183639 ||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||| Sbjct 4590 GGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGG 4649 Query 183640 TTCTTTGCACCTAGTT 183655 |||||||| || |||| Sbjct 4650 TTCTTTGCTCCAAGTT 4665 >seq78999 Length=659 Score = 107 bits (118), Expect = 2e-18 Identities = 216/315 (69%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 183886 AATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTC 183945 ||||| || |||||| ||||||| |||||| || |||||| ||||||| | ||| Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-TTC 263 Query 183946 TTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTT 184005 | |||||| ||||| || || | ||| | || || | || |||| | || | | Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203 Query 184006 GCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCA 184065 || || || || ||||||||||| ||||| | |||| || | | |||||||||||| Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC- 144 Query 184066 GAATTTGAGACGTTCTACACAAAGAACATACTTCTT-AATGAAGGACTACGTGCATGGTT 184124 ||||||||| |||||||| || | || ||||| || ||||| | |||| ||| | Sbjct 143 TTATTTGAGACTTTCTACACCAAAAGTAT-TTTCTTAAACGAAGGTATTCGTGGGTGGAT 85 Query 184125 AGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGG 184184 | | | ||| | | ||||| || ||||||| | | ||||| |||| || Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATGG 25 Query 184185 CAATGCTCTTTGATG 184199 || |||||| ||| Sbjct 24 AAACACTCTTTAATG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609982983583000