Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 212 8e-50
seq95291 185 1e-41
seq13836 156 5e-33
seq78999 107 2e-18
>seq80997
Length=4773
Score = 212 bits (234), Expect = 8e-50
Identities = 303/421 (72%), Gaps = 8/421 (2%)
Strand=Plus/Plus
Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874
||| | |||||||| || | || ||||||||||| ||||||| || ||| | ||| |
Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4416
Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933
||||| ||||| || || | ||||| | || || ||||| || ||||| || |||||
Sbjct 4417 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475
Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993
|| || || || |||| || || | ||||| ||||| ||||| |||||||| || |
Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535
Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053
|| | || || || ||| | || || || || ||||||||||| || || ||||
Sbjct 4536 TCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGA 4595
Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113
||||||| | || ||||| ||||||| |||| ||||| | |||||| | | || |
Sbjct 4596 TGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--T 4653
Query 182114 CTACGC---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170
|| || ||||||||| ||||||||||||||| || || | ||||||||||| ||
Sbjct 4654 GTA-GCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTG 4712
Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230
||| ||| ||||| | |||| || | || || || |||| ||||| |||||||
Sbjct 4713 GATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCC 4772
Query 182231 T 182231
|
Sbjct 4773 T 4773
>seq95291
Length=6073
Score = 185 bits (204), Expect = 1e-41
Identities = 271/378 (72%), Gaps = 8/378 (2%)
Strand=Plus/Minus
Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880
|||||||| || | || ||||||| ||| ||||||| || ||| | ||| | ||||
Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975
Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939
||||| || || | ||||| | || || ||||| || ||||| || ||||| || ||
Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916
Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999
| || |||| || || | ||||| ||||| ||||| | |||||| || | || |
Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856
Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059
|| || || ||| | || || || || ||||||||||| || || ||||||||||
Sbjct 5855 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 5796
Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119
| | || ||||| ||||||| |||| ||||| | |||||| | | || | || ||
Sbjct 5795 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 5739
Query 182120 ---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176
||||||||| ||||||||||||||| || || | ||||||||||| |||||
Sbjct 5738 TTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGC 5679
Query 182177 TGTAGCATACTCTGCTCC 182194
||| ||||| || |||||
Sbjct 5678 TGTTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 156 bits (172), Expect = 5e-33
Identities = 152/196 (78%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 183460 GGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTT 183519
|| || || |||| |||||| || ||||||||||| || | | || || |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 183520 CGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCT 183579
|| || |||||||||||||| | || | || ||||| ||||| | || |||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCATTCTCA 4589
Query 183580 GGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGG 183639
||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct 4590 GGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGG 4649
Query 183640 TTCTTTGCACCTAGTT 183655
|||||||| || ||||
Sbjct 4650 TTCTTTGCTCCAAGTT 4665
>seq78999
Length=659
Score = 107 bits (118), Expect = 2e-18
Identities = 216/315 (69%), Gaps = 4/315 (1%)
Strand=Plus/Minus
Query 183886 AATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTC 183945
||||| || |||||| ||||||| |||||| || |||||| ||||||| | |||
Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-TTC 263
Query 183946 TTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTT 184005
| |||||| ||||| || || | ||| | || || | || |||| | || | |
Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203
Query 184006 GCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCA 184065
|| || || || ||||||||||| ||||| | |||| || | | ||||||||||||
Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC- 144
Query 184066 GAATTTGAGACGTTCTACACAAAGAACATACTTCTT-AATGAAGGACTACGTGCATGGTT 184124
||||||||| |||||||| || | || ||||| || ||||| | |||| ||| |
Sbjct 143 TTATTTGAGACTTTCTACACCAAAAGTAT-TTTCTTAAACGAAGGTATTCGTGGGTGGAT 85
Query 184125 AGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGG 184184
| | | ||| | | ||||| || ||||||| | | ||||| |||| ||
Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATGG 25
Query 184185 CAATGCTCTTTGATG 184199
|| |||||| |||
Sbjct 24 AAACACTCTTTAATG 10
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 609982983583000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |