Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq80997 192 7e-44 seq95291 174 2e-38 >seq80997 Length=4773 Score = 192 bits (212), Expect = 7e-44 Identities = 301/431 (70%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | || || | || |||| ||||| ||||| |||||||| | Sbjct 4343 ATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTC 4402 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| | ||||| ||||| || || || || | Sbjct 4403 CTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAG 4462 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 | || ||||| || | || ||||| | || || | | ||||| ||||| ||||| | Sbjct 4463 ATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTT 4522 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 ||||||| || |||| |||| || || ||| | || || ||||| || ||||||| Sbjct 4523 CTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAG 4582 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 |||| || | ||||||||||| || ||||| ||||||||| || || || | | |||| Sbjct 4583 CAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACT 4642 Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056 || | | || | || |||||||||| | |||||||||| | ||| | |||| Sbjct 4643 TCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTA 4702 Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116 ||||||||||||| ||| ||||||| |||| || ||| || |||| |||| Sbjct 4703 TGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCT 4762 Query 170117 TAGTGTATCCT 170127 | | |||||| Sbjct 4763 TGATCTATCCT 4773 >seq95291 Length=6073 Score = 174 bits (192), Expect = 2e-38 Identities = 277/395 (70%), Gaps = 2/395 (1%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| | || | || || | || |||| ||||| | ||| |||||||| | Sbjct 6054 ATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTC 5995 Query 169757 CATGTCTATTAGCAGCAGCAACCTGC-TTTATCGTTGCTTTCATCGCAGCTCCACCTGTG 169815 | | |||| | ||| | ||| ||||| | ||||| ||||| || || || || Sbjct 5994 CTACTTTATTGACTGCAA-ATTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTA 5936 Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 || || ||||| || | || | ||| | || || | | ||||| ||||| ||||| Sbjct 5935 GATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATT 5876 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 | |||||| || |||| |||| || || ||| | || || ||||| || |||||| Sbjct 5875 TTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAA 5816 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 ||||| || | ||||||||||| || ||||| ||||||||| || || || | | ||| Sbjct 5815 GCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACAC 5756 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || |||||||||| | |||||||||| | ||| | ||| Sbjct 5755 TTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGT 5696 Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090 |||||||||||||| ||| |||||||| ||||| Sbjct 5695 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581215770604000