Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 192 7e-44
seq95291 174 2e-38
>seq80997
Length=4773
Score = 192 bits (212), Expect = 7e-44
Identities = 301/431 (70%), Gaps = 0/431 (0%)
Strand=Plus/Plus
Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756
||||| |||| ||||| | || || | || |||| ||||| ||||| |||||||| |
Sbjct 4343 ATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTC 4402
Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816
| | |||| | ||| | | ||||| | ||||| ||||| || || || || |
Sbjct 4403 CTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAG 4462
Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876
| || ||||| || | || ||||| | || || | | ||||| ||||| ||||| |
Sbjct 4463 ATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTT 4522
Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936
||||||| || |||| |||| || || ||| | || || ||||| || |||||||
Sbjct 4523 CTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAG 4582
Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996
|||| || | ||||||||||| || ||||| ||||||||| || || || | | ||||
Sbjct 4583 CAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACT 4642
Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056
|| | | || | || |||||||||| | |||||||||| | ||| | ||||
Sbjct 4643 TCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTA 4702
Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116
||||||||||||| ||| ||||||| |||| || ||| || |||| ||||
Sbjct 4703 TGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCT 4762
Query 170117 TAGTGTATCCT 170127
| | ||||||
Sbjct 4763 TGATCTATCCT 4773
>seq95291
Length=6073
Score = 174 bits (192), Expect = 2e-38
Identities = 277/395 (70%), Gaps = 2/395 (1%)
Strand=Plus/Minus
Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756
||||| |||| | || | || || | || |||| ||||| | ||| |||||||| |
Sbjct 6054 ATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTC 5995
Query 169757 CATGTCTATTAGCAGCAGCAACCTGC-TTTATCGTTGCTTTCATCGCAGCTCCACCTGTG 169815
| | |||| | ||| | ||| ||||| | ||||| ||||| || || || ||
Sbjct 5994 CTACTTTATTGACTGCAA-ATTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTA 5936
Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875
|| || ||||| || | || | ||| | || || | | ||||| ||||| |||||
Sbjct 5935 GATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATT 5876
Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935
| |||||| || |||| |||| || || ||| | || || ||||| || ||||||
Sbjct 5875 TTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAA 5816
Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995
||||| || | ||||||||||| || ||||| ||||||||| || || || | | |||
Sbjct 5815 GCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACAC 5756
Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055
||| | | || | || |||||||||| | |||||||||| | ||| | |||
Sbjct 5755 TTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGT 5696
Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090
|||||||||||||| ||| |||||||| |||||
Sbjct 5695 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581215770604000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |