Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 259 5e-64
seq95291 230 3e-55
>seq80997
Length=4773
Score = 259 bits (286), Expect = 5e-64
Identities = 325/441 (74%), Gaps = 4/441 (1%)
Strand=Plus/Minus
Query 84518 AGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGAT 84577
|||||| | | ||| |||| || || ||| |||| |||| | || |||||| ||
Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714
Query 84578 CCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TG 84636
||| ||||||||||| |||||| | ||||||||| |||||||||||||| |||| |
Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCAAGCTA 4655
Query 84637 CACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGT 84696
|||||| | |||||| | |||| |||| |||||| || || || |||| ||| || |
Sbjct 4654 CACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCAT 4595
Query 84697 CCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAA 84756
| | | ||||||||||| || ||||| ||||| | ||| ||||| ||| | ||||
Sbjct 4594 CAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAA 4535
Query 84757 CTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGA 84816
| |||||||||||||| |||||||| || | ||||| |||| || |||||||| |
Sbjct 4534 TAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAA 4475
Query 84817 TACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCA 84875
|||| |||||||| ||||| || ||| | | || || || || || ||||| ||| |||
Sbjct 4474 TACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGA-AGTTGCA 4416
Query 84876 GCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTG 84935
| | || ||| |||||||| | | |||||||| |||| || | ||| || | |||
Sbjct 4415 GTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTG 4356
Query 84936 GAGGTGACCCAATCACAGAAG 84956
||| | ||||| |||||||
Sbjct 4355 CTGGTTATCCAATTACAGAAG 4335
>seq95291
Length=6073
Score = 230 bits (254), Expect = 3e-55
Identities = 297/405 (73%), Gaps = 4/405 (1%)
Strand=Plus/Plus
Query 84555 GGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCAT 84614
||||| || || |||||| ||||| ||||||||||| |||||| | |||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 84615 TCACGACCCATGTAAGCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGG 84673
||||||||||||| ||||| | |||||| | |||||| | |||| |||| ||||||
Sbjct 5721 TCACGACCCATGT-AGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5779
Query 84674 TCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAG 84733
|| || || |||| ||| || || | | ||||||||||| || ||||| ||||| |
Sbjct 5780 ACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAA 5839
Query 84734 ACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAG 84793
||| ||||| ||| | |||| | |||||| ||||||| |||||||| || | ||
Sbjct 5840 ACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAG 5899
Query 84794 AGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGC 84853
||| |||| || ||||||| ||||| |||||||| ||||| || ||| | | || ||
Sbjct 5900 AGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGC 5959
Query 84854 AATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAAC 84912
|| || || ||||| | | |||| | || ||| |||||||| | | ||||||| |
Sbjct 5960 GATAATAAATACAGA-ATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATC 6018
Query 84913 CAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAGT 84957
||| || | ||| || | || ||| | ||||| ||||||||
Sbjct 6019 CAATGTAAAGACGATTTTCGATGTTGGTTATCCAATTACAGAAGT 6063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569673783987800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |