Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq80997 259 5e-64 seq95291 230 3e-55 >seq80997 Length=4773 Score = 259 bits (286), Expect = 5e-64 Identities = 325/441 (74%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 84518 AGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGAT 84577 |||||| | | ||| |||| || || ||| |||| |||| | || |||||| || Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714 Query 84578 CCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TG 84636 ||| ||||||||||| |||||| | ||||||||| |||||||||||||| |||| | Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCAAGCTA 4655 Query 84637 CACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGT 84696 |||||| | |||||| | |||| |||| |||||| || || || |||| ||| || | Sbjct 4654 CACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCAT 4595 Query 84697 CCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAA 84756 | | | ||||||||||| || ||||| ||||| | ||| ||||| ||| | |||| Sbjct 4594 CAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAA 4535 Query 84757 CTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGA 84816 | |||||||||||||| |||||||| || | ||||| |||| || |||||||| | Sbjct 4534 TAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAA 4475 Query 84817 TACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCA 84875 |||| |||||||| ||||| || ||| | | || || || || || ||||| ||| ||| Sbjct 4474 TACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGA-AGTTGCA 4416 Query 84876 GCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTG 84935 | | || ||| |||||||| | | |||||||| |||| || | ||| || | ||| Sbjct 4415 GTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTG 4356 Query 84936 GAGGTGACCCAATCACAGAAG 84956 ||| | ||||| ||||||| Sbjct 4355 CTGGTTATCCAATTACAGAAG 4335 >seq95291 Length=6073 Score = 230 bits (254), Expect = 3e-55 Identities = 297/405 (73%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 84555 GGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCAT 84614 ||||| || || |||||| ||||| ||||||||||| |||||| | ||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 84615 TCACGACCCATGTAAGCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGG 84673 ||||||||||||| ||||| | |||||| | |||||| | |||| |||| |||||| Sbjct 5721 TCACGACCCATGT-AGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5779 Query 84674 TCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAG 84733 || || || |||| ||| || || | | ||||||||||| || ||||| ||||| | Sbjct 5780 ACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAA 5839 Query 84734 ACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAG 84793 ||| ||||| ||| | |||| | |||||| ||||||| |||||||| || | || Sbjct 5840 ACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAG 5899 Query 84794 AGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGC 84853 ||| |||| || ||||||| ||||| |||||||| ||||| || ||| | | || || Sbjct 5900 AGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGC 5959 Query 84854 AATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAAC 84912 || || || ||||| | | |||| | || ||| |||||||| | | ||||||| | Sbjct 5960 GATAATAAATACAGA-ATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATC 6018 Query 84913 CAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAGT 84957 ||| || | ||| || | || ||| | ||||| |||||||| Sbjct 6019 CAATGTAAAGACGATTTTCGATGTTGGTTATCCAATTACAGAAGT 6063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569673783987800