Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 161 3e-35
seq95291 141 3e-29
>seq80997
Length=4773
Score = 161 bits (178), Expect = 3e-35
Identities = 277/396 (70%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|| ||| | ||| | || || || || || ||||| || | |||||||| || || |
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920
||||| || ||| | | || ||| | ||| ||||| | || || ||||| || ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTATCGCTGCCCC 4454
Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980
|| |||||||| ||||| || |||||||| ||||| || || || | || ||||||||
Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514
Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040
||| || || || || | | || | ||| || || || | |||||||| |||||
Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574
Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100
||||||||| | | | || |||||| ||||||| ||||| || ||| |||| ||| |
Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634
Query 26101 CTTCCACTTCTTAATAGGAGTAGC-AGC-ATATGCAGGGAGACAGTGGGAACTATCTTAC 26158
| ||||||||| | || ||||| || | ||| || | |||||||||| ||
Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCTTGCTACATG--GGTCGTGAGTGGGAACTTAGTTTT 4692
Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194
| || || ||| | || ||||| ||||||||||
Sbjct 4693 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 4728
>seq95291
Length=6073
Score = 141 bits (156), Expect = 3e-29
Identities = 263/380 (69%), Gaps = 6/380 (2%)
Strand=Plus/Minus
Query 25826 GAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCC 25885
|| || ||||| || | |||||||| | || | ||||| || ||| | | ||
Sbjct 6037 GAAAATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCA 5978
Query 25886 ACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACG 25944
| | | ||| ||||| | || || ||||| || || || |||||||| ||||| || ||
Sbjct 5977 AATTC-TGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCG 5919
Query 25945 TGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCC 26004
||||| ||||| || || || | || ||||||||||| || | || || | | ||
Sbjct 5918 TGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCC 5859
Query 26005 CTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGA 26064
| ||| || || || | |||||||| |||||||||||||| | | | || ||
Sbjct 5858 TACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGA 5799
Query 26065 GTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGC 26124
|||| ||||||| ||||| || ||| |||| ||| | | ||||||||| | || |||||
Sbjct 5798 GTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 5739
Query 26125 -AGC-ATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATA 26182
|| | ||| || | |||||||||| || | || || ||| | || |||||
Sbjct 5738 TTGCTACATG--GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 5681
Query 26183 TTTGTTGCATATACAGCACC 26202
|||||||||| |||| ||
Sbjct 5680 GCTGTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146336046792840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |