Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq80997 210 7e-50 seq95291 181 3e-41 >seq80997 Length=4773 Score = 210 bits (232), Expect = 7e-50 Identities = 312/441 (71%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 36518 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 36577 ||| |||| ||||| |||| | || ||| ||||| | ||| |||| || ||| || Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714 Query 36578 CCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA---AGCTGA 36634 ||| || | |||||| || | | ||||||||||||| | || |||| ||| |||| Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT-- 4656 Query 36635 GATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 36694 | ||||| | ||||| | ||||| |||| ||| || || ||||| ||||||||||| Sbjct 4655 -ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTC 4597 Query 36695 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGG 36754 || | | || ||||||||||| || || || || | ||| || || || | || Sbjct 4596 ATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGG 4537 Query 36755 GACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACG 36814 | || || ||||| ||||| ||||||||||| |||| | ||| || ||||||||||| Sbjct 4536 AATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACG 4477 Query 36815 AATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGC 36874 ||||||||| ||||| || ||||| ||||| | ||| || || | |||| | | ||| Sbjct 4476 AATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGC 4417 Query 36875 TGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGT 36934 || || | | ||| ||||| | || |||||||| || | || || || || | || Sbjct 4416 AGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGT 4357 Query 36935 ACTTGTAACCCAGTCACATAA 36955 || || | ||| | ||| || Sbjct 4356 GCTGGTTATCCAATTACAGAA 4336 >seq95291 Length=6073 Score = 181 bits (200), Expect = 3e-41 Identities = 258/362 (71%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 36555 GGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCAT 36614 || |||||||| || ||| ||||| || | |||||| || | | ||||||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 36615 TGTCGTCCCA---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATAT 36671 | || |||| || ||||| | ||||| | ||||| | ||||| |||| ||| Sbjct 5721 TCACGACCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 5777 Query 36672 GGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 36731 || || ||||| ||||||||||| || | | || ||||||||||| || || || || Sbjct 5778 GGACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGC 5837 Query 36732 AGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGT 36791 | ||| || || || | || | || || ||| | ||||| ||||||||||| ||| Sbjct 5838 AAACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGT 5897 Query 36792 AATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAAT 36851 | | ||| || ||| |||||||||||||||| ||||| || ||||| ||||| | ||| Sbjct 5898 AGAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAA 5957 Query 36852 GCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCAC 36911 || || | |||| | | ||| || || | | ||| ||||| | || ||||||| Sbjct 5958 GCGATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017 Query 36912 CC 36913 || Sbjct 6018 CC 6019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150054128763390