Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 210 7e-50
seq95291 181 3e-41
>seq80997
Length=4773
Score = 210 bits (232), Expect = 7e-50
Identities = 312/441 (71%), Gaps = 6/441 (1%)
Strand=Plus/Minus
Query 36518 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 36577
||| |||| ||||| |||| | || ||| ||||| | ||| |||| || ||| ||
Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714
Query 36578 CCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA---AGCTGA 36634
||| || | |||||| || | | ||||||||||||| | || |||| ||| ||||
Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT-- 4656
Query 36635 GATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 36694
| ||||| | ||||| | ||||| |||| ||| || || ||||| |||||||||||
Sbjct 4655 -ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTC 4597
Query 36695 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGG 36754
|| | | || ||||||||||| || || || || | ||| || || || | ||
Sbjct 4596 ATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGG 4537
Query 36755 GACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACG 36814
| || || ||||| ||||| ||||||||||| |||| | ||| || |||||||||||
Sbjct 4536 AATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACG 4477
Query 36815 AATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGC 36874
||||||||| ||||| || ||||| ||||| | ||| || || | |||| | | |||
Sbjct 4476 AATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGC 4417
Query 36875 TGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGT 36934
|| || | | ||| ||||| | || |||||||| || | || || || || | ||
Sbjct 4416 AGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGT 4357
Query 36935 ACTTGTAACCCAGTCACATAA 36955
|| || | ||| | ||| ||
Sbjct 4356 GCTGGTTATCCAATTACAGAA 4336
>seq95291
Length=6073
Score = 181 bits (200), Expect = 3e-41
Identities = 258/362 (71%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 36555 GGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCAT 36614
|| |||||||| || ||| ||||| || | |||||| || | | |||||||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 36615 TGTCGTCCCA---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATAT 36671
| || |||| || ||||| | ||||| | ||||| | ||||| |||| |||
Sbjct 5721 TCACGACCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 5777
Query 36672 GGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 36731
|| || ||||| ||||||||||| || | | || ||||||||||| || || || ||
Sbjct 5778 GGACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGC 5837
Query 36732 AGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGT 36791
| ||| || || || | || | || || ||| | ||||| ||||||||||| |||
Sbjct 5838 AAACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGT 5897
Query 36792 AATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAAT 36851
| | ||| || ||| |||||||||||||||| ||||| || ||||| ||||| | |||
Sbjct 5898 AGAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAA 5957
Query 36852 GCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCAC 36911
|| || | |||| | | ||| || || | | ||| ||||| | || |||||||
Sbjct 5958 GCGATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017
Query 36912 CC 36913
||
Sbjct 6018 CC 6019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150054128763390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |