Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq80997 192 2e-44 seq95291 172 2e-38 >seq80997 Length=4773 Score = 192 bits (212), Expect = 2e-44 Identities = 286/406 (70%), Gaps = 0/406 (0%) Strand=Plus/Minus Query 5772 CAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTT 5831 |||| | ||| ||||||| || |||||| || ||||| || | | ||||||||| Sbjct 4741 CAACAAGAGCTAAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTT 4682 Query 5832 CCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGT 5891 |||| | || |||| ||| || | ||||| | |||||| | || | |||| | Sbjct 4681 CCCACTCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCAT 4622 Query 5892 ATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGT 5951 | || || || ||||| | ||| ||||| | | |||||||||||||| ||||| || | Sbjct 4621 AAGGACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAAT 4562 Query 5952 GTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGA 6011 | || || || || || | || | || || || || ||||| ||||||||||| | Sbjct 4561 GCAAACCTATAGCCGCAGAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAA 4502 Query 6012 GTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGA 6071 |||||||||| | || || ||||| || || || || || ||||| || ||||| | | Sbjct 4501 GTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAA 4442 Query 6072 ATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACC 6131 | || | |||||| ||| |||||| || || | | || ||||| || |||||||||| Sbjct 4441 AAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACC 4382 Query 6132 ACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | || | || || || || | |||||| || | ||| | |||||| Sbjct 4381 ATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCAATTACAGAA 4336 >seq95291 Length=6073 Score = 172 bits (190), Expect = 2e-38 Identities = 284/410 (69%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 5777 GGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCAT 5836 || ||||||||||| || |||||| || ||||| || | | ||||||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 5837 TGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGT 5896 | || |||| ||| || | ||||| | |||||| | || | |||| || || Sbjct 5721 TCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 5780 Query 5897 CCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAAC 5956 || || ||||| | ||| ||||| | | |||||||||||||| ||||| || || || Sbjct 5781 CCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAA 5840 Query 5957 CCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGA 6016 || || || || | || | || || || | ||||| ||||||||||| |||||| Sbjct 5841 CCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAGA 5900 Query 6017 GATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCT 6076 ||||| | || | ||||| || || || || || ||||| || ||||| | || || Sbjct 5901 GATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCG 5960 Query 6077 AATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCC 6136 | |||||| ||| | |||| || || | | || ||||| || ||| ||||||| || Sbjct 5961 ATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATCCA 6020 Query 6137 ACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAACTTATCCCA 6186 | || || || || | | || | || | ||| | |||||| | | |||| Sbjct 6021 ATGTAAAGACGATTTTCGATGTTGGTTATCCAATTACAGAAGTGACCCCA 6070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152243488619010