Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 192 2e-44
seq95291 172 2e-38
>seq80997
Length=4773
Score = 192 bits (212), Expect = 2e-44
Identities = 286/406 (70%), Gaps = 0/406 (0%)
Strand=Plus/Minus
Query 5772 CAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTT 5831
|||| | ||| ||||||| || |||||| || ||||| || | | |||||||||
Sbjct 4741 CAACAAGAGCTAAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTT 4682
Query 5832 CCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGT 5891
|||| | || |||| ||| || | ||||| | |||||| | || | |||| |
Sbjct 4681 CCCACTCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCAT 4622
Query 5892 ATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGT 5951
| || || || ||||| | ||| ||||| | | |||||||||||||| ||||| || |
Sbjct 4621 AAGGACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAAT 4562
Query 5952 GTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGA 6011
| || || || || || | || | || || || || ||||| ||||||||||| |
Sbjct 4561 GCAAACCTATAGCCGCAGAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAA 4502
Query 6012 GTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGA 6071
|||||||||| | || || ||||| || || || || || ||||| || ||||| | |
Sbjct 4501 GTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAA 4442
Query 6072 ATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACC 6131
| || | |||||| ||| |||||| || || | | || ||||| || ||||||||||
Sbjct 4441 AAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACC 4382
Query 6132 ACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
| || | || || || || | |||||| || | ||| | ||||||
Sbjct 4381 ATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCAATTACAGAA 4336
>seq95291
Length=6073
Score = 172 bits (190), Expect = 2e-38
Identities = 284/410 (69%), Gaps = 0/410 (0%)
Strand=Plus/Plus
Query 5777 GGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCAT 5836
|| ||||||||||| || |||||| || ||||| || | | |||||||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 5837 TGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGT 5896
| || |||| ||| || | ||||| | |||||| | || | |||| || ||
Sbjct 5721 TCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 5780
Query 5897 CCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAAC 5956
|| || ||||| | ||| ||||| | | |||||||||||||| ||||| || || ||
Sbjct 5781 CCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAA 5840
Query 5957 CCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGA 6016
|| || || || | || | || || || | ||||| ||||||||||| ||||||
Sbjct 5841 CCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAGA 5900
Query 6017 GATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCT 6076
||||| | || | ||||| || || || || || ||||| || ||||| | || ||
Sbjct 5901 GATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCG 5960
Query 6077 AATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCC 6136
| |||||| ||| | |||| || || | | || ||||| || ||| ||||||| ||
Sbjct 5961 ATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATCCA 6020
Query 6137 ACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAACTTATCCCA 6186
| || || || || | | || | || | ||| | |||||| | | ||||
Sbjct 6021 ATGTAAAGACGATTTTCGATGTTGGTTATCCAATTACAGAAGTGACCCCA 6070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152243488619010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |