Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq80997 192 2e-44 seq95291 163 9e-36 >seq80997 Length=4773 Score = 192 bits (212), Expect = 2e-44 Identities = 308/441 (70%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 25998 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 26057 ||| |||| ||||| |||| | || ||| ||||| | ||| |||| || ||| || Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714 Query 26058 CCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA---AGCTGA 26114 ||| || | ||| || || | | ||||||||||||| | || |||| ||| |||| Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT-- 4656 Query 26115 GATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTC 26174 | || | | ||||| | ||||| |||| ||| || || ||||| || |||||||| Sbjct 4655 -ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTC 4597 Query 26175 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGG 26234 || | | || ||||||||||| || || || || | ||| || || ||| | || Sbjct 4596 ATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGG 4537 Query 26235 GACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACG 26294 | || || || || ||||| ||||||||||| |||| | ||| || ||||||||||| Sbjct 4536 AATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACG 4477 Query 26295 AATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGC 26354 ||||||||| ||||| || ||||| ||||| | ||| || || | |||| | | ||| Sbjct 4476 AATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGC 4417 Query 26355 TGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGT 26414 || || | | ||| ||||| | || |||||||| || | || || || || | || Sbjct 4416 AGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGT 4357 Query 26415 ACTTGTAACCCAGTCACATAA 26435 || || | ||| | ||| || Sbjct 4356 GCTGGTTATCCAATTACAGAA 4336 >seq95291 Length=6073 Score = 163 bits (180), Expect = 9e-36 Identities = 254/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 26035 GGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCAT 26094 || |||||||| || ||| ||||| || | ||| || || | | ||||||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 26095 TGTCGTCCCAAGTA---AGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATAT 26151 | || |||| ||| |||| | || | | ||||| | ||||| |||| ||| Sbjct 5721 TCACGACCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 5777 Query 26152 GGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 26211 || || ||||| || |||||||| || | | || ||||||||||| || || || || Sbjct 5778 GGACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGC 5837 Query 26212 AGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGT 26271 | ||| || || ||| | || | || || || | ||||| ||||||||||| ||| Sbjct 5838 AAACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGT 5897 Query 26272 AATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAAT 26331 | | ||| || ||| |||||||||||||||| ||||| || ||||| ||||| | ||| Sbjct 5898 AGAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAA 5957 Query 26332 GCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCAC 26391 || || | |||| | | ||| || || | | ||| ||||| | || ||||||| Sbjct 5958 GCGATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017 Query 26392 CC 26393 || Sbjct 6018 CC 6019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151589233851660