Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 192 2e-44
seq95291 163 9e-36
>seq80997
Length=4773
Score = 192 bits (212), Expect = 2e-44
Identities = 308/441 (70%), Gaps = 6/441 (1%)
Strand=Plus/Minus
Query 25998 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 26057
||| |||| ||||| |||| | || ||| ||||| | ||| |||| || ||| ||
Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714
Query 26058 CCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA---AGCTGA 26114
||| || | ||| || || | | ||||||||||||| | || |||| ||| ||||
Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT-- 4656
Query 26115 GATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTC 26174
| || | | ||||| | ||||| |||| ||| || || ||||| || ||||||||
Sbjct 4655 -ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTC 4597
Query 26175 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGG 26234
|| | | || ||||||||||| || || || || | ||| || || ||| | ||
Sbjct 4596 ATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGG 4537
Query 26235 GACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACG 26294
| || || || || ||||| ||||||||||| |||| | ||| || |||||||||||
Sbjct 4536 AATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACG 4477
Query 26295 AATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGC 26354
||||||||| ||||| || ||||| ||||| | ||| || || | |||| | | |||
Sbjct 4476 AATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGC 4417
Query 26355 TGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGT 26414
|| || | | ||| ||||| | || |||||||| || | || || || || | ||
Sbjct 4416 AGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGT 4357
Query 26415 ACTTGTAACCCAGTCACATAA 26435
|| || | ||| | ||| ||
Sbjct 4356 GCTGGTTATCCAATTACAGAA 4336
>seq95291
Length=6073
Score = 163 bits (180), Expect = 9e-36
Identities = 254/362 (70%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 26035 GGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCAT 26094
|| |||||||| || ||| ||||| || | ||| || || | | |||||||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 26095 TGTCGTCCCAAGTA---AGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATAT 26151
| || |||| ||| |||| | || | | ||||| | ||||| |||| |||
Sbjct 5721 TCACGACCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 5777
Query 26152 GGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 26211
|| || ||||| || |||||||| || | | || ||||||||||| || || || ||
Sbjct 5778 GGACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGC 5837
Query 26212 AGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGT 26271
| ||| || || ||| | || | || || || | ||||| ||||||||||| |||
Sbjct 5838 AAACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGT 5897
Query 26272 AATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAAT 26331
| | ||| || ||| |||||||||||||||| ||||| || ||||| ||||| | |||
Sbjct 5898 AGAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAA 5957
Query 26332 GCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCAC 26391
|| || | |||| | | ||| || || | | ||| ||||| | || |||||||
Sbjct 5958 GCGATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017
Query 26392 CC 26393
||
Sbjct 6018 CC 6019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151589233851660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |