Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_016762.1
Length=49135
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 284 4e-72
seq61441 105 2e-18
>seq24349
Length=3626
Score = 284 bits (314), Expect = 4e-72
Identities = 528/760 (69%), Gaps = 25/760 (3%)
Strand=Plus/Plus
Query 5517 TGCGGAAGATCAGCAGGTACTCGGGCATGCCGACACCCATCTTGGTGCCGTCCTTGCACT 5576
|| |||||| ||| | ||||||||| |||||| |||||||| ||||||||||||| |
Sbjct 1510 TGTGGAAGAGCAGGATGTACTCGGGTGAGCCGACGCCCATCTTCGTGCCGTCCTTGCGCA 1569
Query 5577 GTTCCGTCCACGAGAGGCGGTAGGTCTGGGCGTTCTCGCGAACCACGTCGGTGACGATGG 5636
|||| | |||||||||||||||| ||||||||| || ||||||||| || ||
Sbjct 1570 TCTCCGCGTAGCCGAGGCGGTAGGTCTGGTTGTTCTCGCGCACGACGTCGGTGGTGACGG 1629
Query 5637 TCTTCATGCCCATATAGGCCCAGCCATGCTTGACGAAG-GCTCGAGTCACTTCCATGTGG 5695
| |||||||||| ||| | |||||||||||| | | || |||| | |||| ||||
Sbjct 1630 TGATCATGCCCATGTAGTCGAAGCCATGCTTGAGGCCGTGCGCGAG-CGCTTCGGCGTGG 1688
Query 5696 AAGGGGTAGACGGTCTGGAAGCCAAGGCCGGTCATTCCGCCGGGAATGATGCGATCCTTC 5755
|| || ||||||| ||| ||| ||||| | |||| ||| |||||||||
Sbjct 1689 AACGGTGAGACGGTGGGGATGCCGGCTCCGGTGACGTTGCCGAACTGGATTCGATCCTTC 1748
Query 5756 ACGTGGATGCAGGC-CAGA--CGCCCGGGGATGGTCACGCGCAGCAGTTCCGGGATCAGA 5812
||||| |||||| ||| || || || ||| ||||| || ||||| | ||
Sbjct 1749 ACGTG---GCAGGCATAGATCCGTCCTGGACGCAGCACCCGCAGGAGCTCCGGAGTGAGG 1805
Query 5813 TAGTCCATCTGCTCGAAGAAGTGCGCGTTGTCGTCGGTGTGGCCGAAGTCGGCGTAGTTC 5872
||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1806 TAGTCCATCTGCTGCCAGAAGTGCAGGTTGTCGTCGGTGTGGCCGAAGTCGTTGTAGCTG 1865
Query 5873 GGCGAGTACTCGTACTGGGTGCTGAAGGGGATGCTGGTGATGGTCAAGCCGACGCTGTTG 5932
|| | ||||||||| ||| | ||| ||||| |||| | ||| | ||||| ||
Sbjct 1866 GGGGTGTACTCGTAGTGGTTCGAGAACGGGATCGACGTGACGATCAGGTCGACGGAGTCC 1925
Query 5933 CTTTCCATGCG---GCAGGTTTCGAGCACGGTGTCGTTGTTGACGATGGTGTAGTCCTTG 5989
| ||||| | || ||| |||| |||| ||||||| ||| || || || |
Sbjct 1926 GTGGCCATGTGGTCGCGGGTCTCGATCACGCAGTCGTTGAGCGCGAGCGTCCAG-CCGGG 1984
Query 5990 CCCTTGAT--CTCGACGCGCTCCACGCCCATGGAGCGGGTGAGGGTCTGTGCCATGGCGG 6047
||| ||| ||||||||||| |||||||||| ||||||||| | | || ||||
Sbjct 1985 CCC-GGATGCTTCGACGCGCTCGACGCCCATGGCGCGGGTGAGTGCGGCGGAGATCGCGG 2043
Query 6048 CCACGGACAGGCCGTACTGCTTGATGATCTCGGTCATG----CGCTGAACCATGGTGTTG 6103
| | || ||| ||| ||| | ||| ||||| || ||| | || || |
Sbjct 2044 CGGGGTTGAGTCCGAACTCGCGGATCACGTCGCTCATGGTGTCGGTGAGC--TG--GTCG 2099
Query 6104 TGCTGCTGCCACTTCCGTTCGAGTTGGCGGCGGATGTCGCGCTCGGCCTCGGTATAGATC 6163
|||| | ||||||| ||| | |||||| ||| ||||| |||| ||||||
Sbjct 2100 TGCTCTTCCCACTTCGCCAGGAGGGTGTCGCGGATCTCGGACTCGGTTTCGGCGTAGATC 2159
Query 6164 AGGTCGATG-CGCACACGGCCTGTCTGCAGGAATCGGTGCAGGCGGTGAATGGACTGGAT 6222
|||| | | |||| | ||| ||| ||| || || | |||||| | || ||||||
Sbjct 2160 AGGTGCACGTCGCAGGTGCTCTG-CTGTCCGAAGCGCTGGATGCGGTGCACGGCCTGGAT 2218
Query 6223 GAAGTCGTTGAACTTGAAGCCGATGCCCAGGTAGATGGCC 6262
||||||||| ||| || || ||| | | ||| ||||
Sbjct 2219 CGTGTCGTTGAATTTGTAGGTGACGCCGACGAAGACGGCC 2258
>seq61441
Length=859
Score = 105 bits (116), Expect = 2e-18
Identities = 164/230 (71%), Gaps = 7/230 (3%)
Strand=Plus/Plus
Query 21286 CAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACC--GC 21343
|||||| | || | |||||| | || || |||| |||||||||||| |||| |
Sbjct 552 CAAGCTCATCGCCAAGGAGCTGCAGGTGCCGGTCATCGCGCTGTCGCAGCTGAACCGTGG 611
Query 21344 TCCCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCG 21403
|||| |||||||| | | ||||| || ||| |||||||| |||||||| ||
Sbjct 612 TCCC--GAGCAGCGCCAGGACAAGAAGCCCGCGATCAGCGACCTGCGAGAGTCCGGATCG 669
Query 21404 ATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGAT 21463
||||||||||||||||| || |||| | || |||||||| ||||||| || |||
Sbjct 670 ATCGAGCAGGACGCCGACATGGTCATCCTGCTGCACCGCGACTCGGTCTACGACAAGGAC 729
Query 21464 ACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGG 21513
|| || | ||||| ||| || | ||| | || ||||| || |||||
Sbjct 730 GTCC-GT--CCCGGCGAGGCCGACCTCATCGTGGCCAAGCATCGTAACGG 776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156692421036990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |