Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq24349 284 4e-72 seq61441 105 2e-18 >seq24349 Length=3626 Score = 284 bits (314), Expect = 4e-72 Identities = 528/760 (69%), Gaps = 25/760 (3%) Strand=Plus/Plus Query 5517 TGCGGAAGATCAGCAGGTACTCGGGCATGCCGACACCCATCTTGGTGCCGTCCTTGCACT 5576 || |||||| ||| | ||||||||| |||||| |||||||| ||||||||||||| | Sbjct 1510 TGTGGAAGAGCAGGATGTACTCGGGTGAGCCGACGCCCATCTTCGTGCCGTCCTTGCGCA 1569 Query 5577 GTTCCGTCCACGAGAGGCGGTAGGTCTGGGCGTTCTCGCGAACCACGTCGGTGACGATGG 5636 |||| | |||||||||||||||| ||||||||| || ||||||||| || || Sbjct 1570 TCTCCGCGTAGCCGAGGCGGTAGGTCTGGTTGTTCTCGCGCACGACGTCGGTGGTGACGG 1629 Query 5637 TCTTCATGCCCATATAGGCCCAGCCATGCTTGACGAAG-GCTCGAGTCACTTCCATGTGG 5695 | |||||||||| ||| | |||||||||||| | | || |||| | |||| |||| Sbjct 1630 TGATCATGCCCATGTAGTCGAAGCCATGCTTGAGGCCGTGCGCGAG-CGCTTCGGCGTGG 1688 Query 5696 AAGGGGTAGACGGTCTGGAAGCCAAGGCCGGTCATTCCGCCGGGAATGATGCGATCCTTC 5755 || || ||||||| ||| ||| ||||| | |||| ||| ||||||||| Sbjct 1689 AACGGTGAGACGGTGGGGATGCCGGCTCCGGTGACGTTGCCGAACTGGATTCGATCCTTC 1748 Query 5756 ACGTGGATGCAGGC-CAGA--CGCCCGGGGATGGTCACGCGCAGCAGTTCCGGGATCAGA 5812 ||||| |||||| ||| || || || ||| ||||| || ||||| | || Sbjct 1749 ACGTG---GCAGGCATAGATCCGTCCTGGACGCAGCACCCGCAGGAGCTCCGGAGTGAGG 1805 Query 5813 TAGTCCATCTGCTCGAAGAAGTGCGCGTTGTCGTCGGTGTGGCCGAAGTCGGCGTAGTTC 5872 ||||||||||||| |||||||| ||||||||||||||||||||||||| |||| | Sbjct 1806 TAGTCCATCTGCTGCCAGAAGTGCAGGTTGTCGTCGGTGTGGCCGAAGTCGTTGTAGCTG 1865 Query 5873 GGCGAGTACTCGTACTGGGTGCTGAAGGGGATGCTGGTGATGGTCAAGCCGACGCTGTTG 5932 || | ||||||||| ||| | ||| ||||| |||| | ||| | ||||| || Sbjct 1866 GGGGTGTACTCGTAGTGGTTCGAGAACGGGATCGACGTGACGATCAGGTCGACGGAGTCC 1925 Query 5933 CTTTCCATGCG---GCAGGTTTCGAGCACGGTGTCGTTGTTGACGATGGTGTAGTCCTTG 5989 | ||||| | || ||| |||| |||| ||||||| ||| || || || | Sbjct 1926 GTGGCCATGTGGTCGCGGGTCTCGATCACGCAGTCGTTGAGCGCGAGCGTCCAG-CCGGG 1984 Query 5990 CCCTTGAT--CTCGACGCGCTCCACGCCCATGGAGCGGGTGAGGGTCTGTGCCATGGCGG 6047 ||| ||| ||||||||||| |||||||||| ||||||||| | | || |||| Sbjct 1985 CCC-GGATGCTTCGACGCGCTCGACGCCCATGGCGCGGGTGAGTGCGGCGGAGATCGCGG 2043 Query 6048 CCACGGACAGGCCGTACTGCTTGATGATCTCGGTCATG----CGCTGAACCATGGTGTTG 6103 | | || ||| ||| ||| | ||| ||||| || ||| | || || | Sbjct 2044 CGGGGTTGAGTCCGAACTCGCGGATCACGTCGCTCATGGTGTCGGTGAGC--TG--GTCG 2099 Query 6104 TGCTGCTGCCACTTCCGTTCGAGTTGGCGGCGGATGTCGCGCTCGGCCTCGGTATAGATC 6163 |||| | ||||||| ||| | |||||| ||| ||||| |||| |||||| Sbjct 2100 TGCTCTTCCCACTTCGCCAGGAGGGTGTCGCGGATCTCGGACTCGGTTTCGGCGTAGATC 2159 Query 6164 AGGTCGATG-CGCACACGGCCTGTCTGCAGGAATCGGTGCAGGCGGTGAATGGACTGGAT 6222 |||| | | |||| | ||| ||| ||| || || | |||||| | || |||||| Sbjct 2160 AGGTGCACGTCGCAGGTGCTCTG-CTGTCCGAAGCGCTGGATGCGGTGCACGGCCTGGAT 2218 Query 6223 GAAGTCGTTGAACTTGAAGCCGATGCCCAGGTAGATGGCC 6262 ||||||||| ||| || || ||| | | ||| |||| Sbjct 2219 CGTGTCGTTGAATTTGTAGGTGACGCCGACGAAGACGGCC 2258 >seq61441 Length=859 Score = 105 bits (116), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 21286 CAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACC--GC 21343 |||||| | || | |||||| | || || |||| |||||||||||| |||| | Sbjct 552 CAAGCTCATCGCCAAGGAGCTGCAGGTGCCGGTCATCGCGCTGTCGCAGCTGAACCGTGG 611 Query 21344 TCCCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCG 21403 |||| |||||||| | | ||||| || ||| |||||||| |||||||| || Sbjct 612 TCCC--GAGCAGCGCCAGGACAAGAAGCCCGCGATCAGCGACCTGCGAGAGTCCGGATCG 669 Query 21404 ATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGAT 21463 ||||||||||||||||| || |||| | || |||||||| ||||||| || ||| Sbjct 670 ATCGAGCAGGACGCCGACATGGTCATCCTGCTGCACCGCGACTCGGTCTACGACAAGGAC 729 Query 21464 ACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGG 21513 || || | ||||| ||| || | ||| | || ||||| || ||||| Sbjct 730 GTCC-GT--CCCGGCGAGGCCGACCTCATCGTGGCCAAGCATCGTAACGG 776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156692421036990