Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 206 3e-48
seq95291 172 6e-38
seq13836 132 5e-26
seq55772 129 7e-25
seq78999 84.2 2e-11
seq76780 82.4 9e-11
>seq80997
Length=4773
Score = 206 bits (228), Expect = 3e-48
Identities = 314/441 (71%), Gaps = 6/441 (1%)
Strand=Plus/Plus
Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951
||||| | ||| |||| ||| | || || || || | || ||||| || || ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010
|||||||| ||| | ||| | |||||| ||||| || || |||| || ||||||| ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454
Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070
|| || || ||||| || || |||||||| || |||| || || | ||||| |||||
Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514
Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130
||||| |||||||| || |||| |||| || || ||| | || || ||||| ||
Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574
Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190
||||||||| || || ||||||||||| | || ||||| ||||||| |||| | ||
Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634
Query 163191 CTTTCACTTCCTTATCG--GCATCTATGCATATATGGGACGTGAATGGGAACTTTCATAT 163248
| |||||| | | | | | || ||| || ||||| ||||| ||||||||| | |
Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTT 4692
Query 163249 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 163308
|| | |||||||| || ||||| ||| ||||| | || | ||||| ||| || |
Sbjct 4693 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACT 4752
Query 163309 GCAGTCTTCCTGGTCTATCCT 163329
| || ||| || ||||||||
Sbjct 4753 ACTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 172 bits (190), Expect = 6e-38
Identities = 259/362 (72%), Gaps = 6/362 (2%)
Strand=Plus/Minus
Query 162934 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 162992
|| ||||| | || |||||||||| ||| | ||| | |||| | ||||| || || |
Sbjct 6019 GGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTAT 5961
Query 162993 CGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTC 163052
||| || ||||||| || || || || ||||| || || ||||||| || |||| ||
Sbjct 5960 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATC 5901
Query 163053 ACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 163112
|| | ||||| ||||| ||||| | |||||| || |||| |||| || || ||
Sbjct 5900 TCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGG 5841
Query 163113 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 163172
| | || || ||||| ||||||||||| || || ||||||||||| | || ||||| ||
Sbjct 5840 TTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGG 5781
Query 163173 TCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCG--GCATCTATGCATATATGGGACGT 163230
||||| |||| | || | |||||| | | | | | || ||| || ||||| |||
Sbjct 5780 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGT 5723
Query 163231 GAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCA 163290
|| ||||||||| | ||| | |||||||| || ||||| ||| ||||| || ||
Sbjct 5722 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 5663
Query 163291 CC 163292
||
Sbjct 5662 CC 5661
>seq13836
Length=10167
Score = 132 bits (146), Expect = 5e-26
Identities = 146/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 164886 GGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTC 164945
|| || || |||| ||| || |||||||||||||| |||| |||| || |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 164946 CGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTC 165004
|| || ||||| || || || ||| | | | || ||||| ||||| | || |||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588
Query 165005 TGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTG 165064
||||| |||||||||||||| || |||||||| || |||||||||||||| ||||
Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648
Query 165065 GTTTTTCGCTCC 165076
||| || |||||
Sbjct 4649 GTTCTTTGCTCC 4660
>seq55772
Length=6464
Score = 129 bits (142), Expect = 7e-25
Identities = 167/227 (74%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122
||||||||||| |||||||| || || |||||||| || |||||| || || || ||
Sbjct 1368 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 1309
Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182
|| ||||| | ||||| || || ||||| ||||| | || |||||| |||| |||
Sbjct 1308 GCATGCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCA 1249
Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242
||||| || || || || | || |||||| | ||||| ||||| | ||||||||
Sbjct 1248 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 1189
Query 164243 TCTGATTGTGTTGTGGTTACTGATCAAG--AGGAGAATCTCTACTGA 164287
| |||||||| | | ||| | |||| ||||||| |||||||||
Sbjct 1188 GCAGATTGTGTAATTGAAACTCA-CAAGGAAGGAGAA-CTCTACTGA 1144
Score = 129 bits (142), Expect = 7e-25
Identities = 167/227 (74%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122
||||||||||| |||||||| || || |||||||| || |||||| || || || ||
Sbjct 3836 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 3777
Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182
|| ||||| | ||||| || || ||||||||||| | | |||||| |||| |||
Sbjct 3776 GCATGCTCTACCTGTGCTGGGAAGATTGTATCTGGTTCATTGGATCAGTCTGATGGCTCA 3717
Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242
||||| || || || || | || |||||| | ||||| ||||| | ||||||||
Sbjct 3716 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 3657
Query 164243 TCTGATTGTGTTGTGGTTACTGATCAAG--AGGAGAATCTCTACTGA 164287
| |||||||| | | ||| | |||| ||||||| |||||||||
Sbjct 3656 GCAGATTGTGTAATTGAAACTCA-CAAGGAAGGAGAA-CTCTACTGA 3612
>seq78999
Length=659
Score = 84.2 bits (92), Expect = 2e-11
Identities = 212/317 (67%), Gaps = 4/317 (1%)
Strand=Plus/Minus
Query 165312 AACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTT 165371
|| ||||| ||||| | ||||| |||| || | || || | ||| | | || |
Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTTCT 262
Query 165372 TTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA-CATCCTCTATTGGCATTATTGGTCT 165430
| ||||| ||||| || || | ||| | ||| ||| || |||| | || || |
Sbjct 261 GT-ATGTTATTTGTACCAGTAACTGGTTTACGGATCATTA-CTTTTGGGGTAGTTAGTTT 204
Query 165431 TGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCC 165490
|| || ||||| |||||||| || || || | | || || | | ||||||||||||
Sbjct 203 GGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC 144
Query 165491 AGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTT 165550
| |||||||| ||||||||||||| || | || || ||||| | |||| ||| |
Sbjct 143 TTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGAT 85
Query 165551 GGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGG 165610
|| | | ||| | | ||||||||| |||| ||| | |||| || | || ||
Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATGG 25
Query 165611 CAACGCCCTTTAATAAA 165627
||| | ||||||| ||
Sbjct 24 AAACACTCTTTAATGAA 8
>seq76780
Length=5561
Score = 82.4 bits (90), Expect = 9e-11
Identities = 141/202 (70%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 164759 TTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTA 164817
||| ||| | ||||| ||| ||||| | || || || || || || || ||| || |
Sbjct 406 TTCTTATTTAGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCCACTCCCGCTAATAGTT 348
Query 164818 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGT 164877
| | || ||| | | |||| ||||||||||| | ||||| ||||| | ||||
Sbjct 347 TAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTTACCTGTTGGT 288
Query 164878 GCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTT 164937
| || | || || || |||| ||| || ||| |||||||||| |||| |||| ||||
Sbjct 287 GTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGATTAATAGGTT 228
Query 164938 TCATGCTCCGCCAGTTTGAGCT 164959
||||| | || | ||||| ||
Sbjct 227 TCATGTTACGTTAATTTGAACT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561632366715800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |