Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq205188 163 5e-35 >seq205188 Length=846 Score = 163 bits (180), Expect = 5e-35 Identities = 365/537 (68%), Gaps = 11/537 (2%) Strand=Plus/Plus Query 48152 CCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGT 48211 || ||||| ||| |||||| ||||||||||| ||| || ||||||| |||| | Sbjct 7 CCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCCCGTTTC 66 Query 48212 TTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270 ||||||||||| | || || |||| || ||||||||||| ||||| || || || Sbjct 67 TTGAGCCAGAAGA-TGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAGGCAAA 125 Query 48271 CGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTC 48330 ||| || | ||| |||| || || ||| ||||||| || ||||||| Sbjct 126 TGCGACGATGCGCTCGGCGAAGGAGTCGGAAGAGTC---GATCCAGCGGAGGGCCCAGTT 182 Query 48331 TGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG-CTTCTTGCACTCAC 48389 |||||||| ||| || || || || || ||||| | ||||| | ||| ||| Sbjct 183 GGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTT-TTCTCTA 241 Query 48390 CTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTA 48449 | | ||| | ||||| ||| || ||||||||| ||||| | ||||| | Sbjct 242 CGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGA 301 Query 48450 TAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATC 48509 | ||||||||||| ||||| ||||| | |||||| | ||||| || || | | || Sbjct 302 TGGCGATCTGGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGGACCTC-CTTCATAAAA 360 Query 48510 TCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGT 48568 || || || || || || || || || || || || |||||||||||||| || Sbjct 361 CGGCCGGCGAGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGACGTGG 420 Query 48569 TTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC-AGCCCTGTACGTCTTTGCCCAG 48627 | | ||||||||||||| || |||||||| |||| | ||| | ||| | || Sbjct 421 GTGATGAAATGGCGCTCGCCGTCGGTGAGAGTGTTCCAATGGCTG-ATGTCCTGAGAGAG 479 Query 48628 GTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || ||| | |||||||| || || |||||| |||||||| |||| || Sbjct 480 ATCGACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTACATTTCCCAGAT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928924100614400