Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 228 8e-55
seq95291 196 5e-45
seq13836 152 5e-32
seq78999 107 2e-18
>seq80997
Length=4773
Score = 228 bits (252), Expect = 8e-55
Identities = 305/419 (73%), Gaps = 4/419 (1%)
Strand=Plus/Plus
Query 8269 ACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCC 8328
||| | ||||| | || | || |||||||| ||| | ||||| || || || ||| |
Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACT-TTATTGAC 4415
Query 8329 -GCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCAT 8387
|| || | || |||| ||| || | ||||| ||||| || || || || || ||
Sbjct 4416 TGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475
Query 8388 CCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGT 8447
|| || || ||| |||||||||| | || || ||||| ||||| |||||||| || |
Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535
Query 8448 TCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGA 8507
||| | ||| || || || | || || || || ||||||||||| |||||| ||||
Sbjct 4536 TCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGA 4595
Query 8508 TGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGT 8567
||||||| | |||||||| |||||||| | || | ||| | |||||| | ||||| ||
Sbjct 4596 TGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 4655
Query 8568 -CTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGA 8626
|||| || ||||||||||| ||||||||| || || || || |||||||||||||
Sbjct 4656 AGCTTGC-TACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 4714
Query 8627 TCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCT 8685
| ||||||||| | |||| ||||| || ||| || |||| ||| | ||||||||
Sbjct 4715 TTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 196 bits (216), Expect = 5e-45
Identities = 263/361 (73%), Gaps = 4/361 (1%)
Strand=Plus/Minus
Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGC-TTCATTAC 8348
|| ||||||| ||| | ||||| || || || ||| | | | | || || ||||
Sbjct 6019 GGATGGTTTGATGTTTTGATGATTCCTACT-TTATTGACTGCAAATTCTGTATTTATTAT 5961
Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408
||| || | ||||| ||||| || || || || || || || || | ||| |||||||
Sbjct 5960 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATC 5901
Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468
||| | || || ||||| ||||| | |||||| || |||| | ||| || || ||
Sbjct 5900 TCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGG 5841
Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528
| || || || || ||||||||||| |||||| ||||||||||| | |||||||| ||
Sbjct 5840 TTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGG 5781
Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTG 8587
|||||| | || | ||| | |||||| | ||||| || ||||| | ||||||||||
Sbjct 5780 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCT-ACATGGGTCGTG 5722
Query 8588 AATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTC 8647
| ||||||||| || || || || |||||||||||||| ||||||||| || ||||
Sbjct 5721 AGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 5662
Query 8648 C 8648
|
Sbjct 5661 C 5661
>seq13836
Length=10167
Score = 152 bits (168), Expect = 5e-32
Identities = 155/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 10088 CAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTT 10147
||| | || || || ||| ||||||| || |||||||| || |||| ||||| || ||
Sbjct 4464 CAGTTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTC 4523
Query 10148 ATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCG 10207
|||||||| || ||||| || || ||| || | | |||||||| ||||| | |||
Sbjct 4524 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCA 4583
Query 10208 TTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCT 10267
|| || || || |||||||||||||| ||| ||||| || |||||||| || ||||||
Sbjct 4584 TTCTCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCT 4643
Query 10268 AGTTGGTTCTTTGCGCCGAGTT 10289
||||||||||||| || ||||
Sbjct 4644 GGTTGGTTCTTTGCTCCAAGTT 4665
>seq78999
Length=659
Score = 107 bits (118), Expect = 2e-18
Identities = 171/243 (70%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 10518 CTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATT 10577
|||| || || ||||| | || ||| ||||||| ||||||| | ||| | | ||
Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT 264
Query 10578 TCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTC 10637
|| |||| | |||||||| || | ||| | ||| | | || |||| | || ||
Sbjct 263 -CTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205
Query 10638 TTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATC 10697
| || || || || |||||||| || ||||| ||| |||| || | | |||||||||
Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145
Query 10698 CTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGA 10757
|| ||||||||| ||||| || || | ||| | | ||||||||| |||||| ||||
Sbjct 144 CT-TATTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86
Query 10758 TGG 10760
|||
Sbjct 85 TGG 83
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515033630040000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |