Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq80997 228 8e-55 seq95291 196 5e-45 seq13836 152 5e-32 seq78999 107 2e-18 >seq80997 Length=4773 Score = 228 bits (252), Expect = 8e-55 Identities = 305/419 (73%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 8269 ACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCC 8328 ||| | ||||| | || | || |||||||| ||| | ||||| || || || ||| | Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACT-TTATTGAC 4415 Query 8329 -GCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCAT 8387 || || | || |||| ||| || | ||||| ||||| || || || || || || Sbjct 4416 TGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475 Query 8388 CCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGT 8447 || || || ||| |||||||||| | || || ||||| ||||| |||||||| || | Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535 Query 8448 TCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGA 8507 ||| | ||| || || || | || || || || ||||||||||| |||||| |||| Sbjct 4536 TCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGA 4595 Query 8508 TGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGT 8567 ||||||| | |||||||| |||||||| | || | ||| | |||||| | ||||| || Sbjct 4596 TGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 4655 Query 8568 -CTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGA 8626 |||| || ||||||||||| ||||||||| || || || || ||||||||||||| Sbjct 4656 AGCTTGC-TACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 4714 Query 8627 TCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCT 8685 | ||||||||| | |||| ||||| || ||| || |||| ||| | |||||||| Sbjct 4715 TTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 196 bits (216), Expect = 5e-45 Identities = 263/361 (73%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGC-TTCATTAC 8348 || ||||||| ||| | ||||| || || || ||| | | | | || || |||| Sbjct 6019 GGATGGTTTGATGTTTTGATGATTCCTACT-TTATTGACTGCAAATTCTGTATTTATTAT 5961 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| || | ||||| ||||| || || || || || || || || | ||| ||||||| Sbjct 5960 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATC 5901 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || ||||| ||||| | |||||| || |||| | ||| || || || Sbjct 5900 TCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGG 5841 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || || || ||||||||||| |||||| ||||||||||| | |||||||| || Sbjct 5840 TTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGG 5781 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTG 8587 |||||| | || | ||| | |||||| | ||||| || ||||| | |||||||||| Sbjct 5780 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCT-ACATGGGTCGTG 5722 Query 8588 AATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTC 8647 | ||||||||| || || || || |||||||||||||| ||||||||| || |||| Sbjct 5721 AGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 5662 Query 8648 C 8648 | Sbjct 5661 C 5661 >seq13836 Length=10167 Score = 152 bits (168), Expect = 5e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10088 CAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTT 10147 ||| | || || || ||| ||||||| || |||||||| || |||| ||||| || || Sbjct 4464 CAGTTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTC 4523 Query 10148 ATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCG 10207 |||||||| || ||||| || || ||| || | | |||||||| ||||| | ||| Sbjct 4524 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCA 4583 Query 10208 TTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCT 10267 || || || || |||||||||||||| ||| ||||| || |||||||| || |||||| Sbjct 4584 TTCTCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCT 4643 Query 10268 AGTTGGTTCTTTGCGCCGAGTT 10289 ||||||||||||| || |||| Sbjct 4644 GGTTGGTTCTTTGCTCCAAGTT 4665 >seq78999 Length=659 Score = 107 bits (118), Expect = 2e-18 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 10518 CTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATT 10577 |||| || || ||||| | || ||| ||||||| ||||||| | ||| | | || Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT 264 Query 10578 TCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTC 10637 || |||| | |||||||| || | ||| | ||| | | || |||| | || || Sbjct 263 -CTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205 Query 10638 TTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATC 10697 | || || || || |||||||| || ||||| ||| |||| || | | ||||||||| Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145 Query 10698 CTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGA 10757 || ||||||||| ||||| || || | ||| | | ||||||||| |||||| |||| Sbjct 144 CT-TATTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86 Query 10758 TGG 10760 ||| Sbjct 85 TGG 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515033630040000