Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 250 3e-61
seq95291 221 1e-52
seq13836 118 1e-21
seq55772 91.5 2e-13
seq76780 87.8 2e-12
>seq80997
Length=4773
Score = 250 bits (276), Expect = 3e-61
Identities = 326/442 (74%), Gaps = 8/442 (2%)
Strand=Plus/Plus
Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935
|| ||||| ||| | ||||||||||| || || ||||| |||| ||||| || || ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993
|||||||| | ||| | | |||| || | ||| || || || || || | | ||| |
Sbjct 4396 ATGATTCC-TACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453
Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053
| || || || || || || |||||||| || || |||| || || | ||||||||||
Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513
Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113
| ||||| |||||||| |||| ||| ||||| ||||| ||| |||| || || || |
Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573
Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173
||||||||||||| | | || || ||| | |||||||| ||||||| |||| |||
Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633
Query 161174 TGTTCCACTTCCTGATTG--GCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTA 161231
| | |||||| | ||| | | || ||| |||||||||||||||||||||||| ||
Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTT 4691
Query 161232 CCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAG 161291
|||||||| ||||||||||||||| || ||||| | |||| ||| | || || |
Sbjct 4692 TCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTAC 4751
Query 161292 TGCAGTGTTCCTGGTCTATCCT 161313
| | || ||| || ||||||||
Sbjct 4752 TACTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 221 bits (244), Expect = 1e-52
Identities = 304/415 (73%), Gaps = 10/415 (2%)
Strand=Plus/Minus
Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926
|||| || || ||||| ||| | |||| || ||| || || ||||| |||| |||||
Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011
Query 160927 GGCGTCCTGATGATTCCCTGCTTGCTCG-CTGCTACCATT-TGT-TTCATCATTGCCTTC 160983
| || |||||||||| | ||| | | |||| | ||| ||| || || || || ||
Sbjct 6010 GATGTTTTGATGATTCC-TACTTTATTGACTGCAA--ATTCTGTATTTATTATCGCTTTT 5954
Query 160984 GTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATG 161043
| | ||| || || || || || || || |||||||| | || |||| || || |
Sbjct 5953 ATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTT 5894
Query 161044 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 161103
||||||||||| ||||| | |||||| |||| ||| ||||| ||||| ||| ||||
Sbjct 5893 TATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCAT 5834
Query 161104 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 161163
|| || || |||||||||||||| | | || || ||| | |||||||| |||||||
Sbjct 5833 TTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTAT 5774
Query 161164 CAACTCGTTGTGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGG 161221
|||| |||| | |||||| | |||| | || |||| ||||||||||||||||||
Sbjct 5773 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGG 5716
Query 161222 AACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCC 161276
||||| || |||||||| ||||||||||||||| || ||||| || |||||
Sbjct 5715 AACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 118 bits (130), Expect = 1e-21
Identities = 143/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 162396 GGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT 162455
|| || || ||||||||||| || |||||||| || || | | | ||||| |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 162456 CGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTC 162514
|| || |||||||| || ||| || || | | || ||||| ||||| | || |||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588
Query 162515 AGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTG 162574
|||||| |||||||| || ||| ||| || ||||| ||||| |||| || || ||
Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648
Query 162575 GTTCTTCGCACC 162586
|||||| || ||
Sbjct 4649 GTTCTTTGCTCC 4660
>seq55772
Length=6464
Score = 91.5 bits (100), Expect = 2e-13
Identities = 155/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400
||||| || || ||||| ||||| || || || ||||| |||||||||||| || ||
Sbjct 1368 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 1309
Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460
|| || || | ||||| || || | || ||||| | || || || || ||
Sbjct 1308 GCATGCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCA 1249
Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520
||||| || || |||||| | || || | || || ||||| || ||||| ||
Sbjct 1248 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 1189
Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565
|||||||| ||||| ||| ||||||||| ||||| || |||
Sbjct 1188 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 1144
Score = 86.0 bits (94), Expect = 7e-12
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400
||||| || || ||||| ||||| || || || ||||| |||||||||||| || ||
Sbjct 3836 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 3777
Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460
|| || || | ||||| || || | || ||||| | | || || || ||
Sbjct 3776 GCATGCTCTACCTGTGCTGGGAAGATTGTATCTGGTTCATTGGATCAGTCTGATGGCTCA 3717
Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520
||||| || || |||||| | || || | || || ||||| || ||||| ||
Sbjct 3716 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 3657
Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565
|||||||| ||||| ||| ||||||||| ||||| || |||
Sbjct 3656 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 3612
>seq76780
Length=5561
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 162264 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 162322
|| ||||| ||| | || || ||||| ||| | || || |||||||| ||||| || |
Sbjct 411 GCAAGTTCTTATTTAGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCCACTCCCGCTAA 353
Query 162323 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 162382
| | | || ||| | || | || ||||||||||| | || || | || | | |
Sbjct 352 TAGTTTAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTTACCTG 293
Query 162383 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 162442
||||| || | || || || ||||||||||| || ||||||| || || | | | ||
Sbjct 292 TTGGTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGATTAAT 233
Query 162443 AGGTTTCATGCTTCGCCAGTTTGAACT 162469
|||||||||| | || | ||||||||
Sbjct 232 AGGTTTCATGTTACGTTAATTTGAACT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546213268200600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |