Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq80997 250 3e-61 seq95291 221 1e-52 seq13836 118 1e-21 seq55772 91.5 2e-13 seq76780 87.8 2e-12 >seq80997 Length=4773 Score = 250 bits (276), Expect = 3e-61 Identities = 326/442 (74%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||| ||| | ||||||||||| || || ||||| |||| ||||| || || || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 |||||||| | ||| | | |||| || | ||| || || || || || | | ||| | Sbjct 4396 ATGATTCC-TACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || || || || || || |||||||| || || |||| || || | |||||||||| Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | ||||| |||||||| |||| ||| ||||| ||||| ||| |||| || || || | Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 ||||||||||||| | | || || ||| | |||||||| ||||||| |||| ||| Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633 Query 161174 TGTTCCACTTCCTGATTG--GCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTA 161231 | | |||||| | ||| | | || ||| |||||||||||||||||||||||| || Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTT 4691 Query 161232 CCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAG 161291 |||||||| ||||||||||||||| || ||||| | |||| ||| | || || | Sbjct 4692 TCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTAC 4751 Query 161292 TGCAGTGTTCCTGGTCTATCCT 161313 | | || ||| || |||||||| Sbjct 4752 TACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 221 bits (244), Expect = 1e-52 Identities = 304/415 (73%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 |||| || || ||||| ||| | |||| || ||| || || ||||| |||| ||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011 Query 160927 GGCGTCCTGATGATTCCCTGCTTGCTCG-CTGCTACCATT-TGT-TTCATCATTGCCTTC 160983 | || |||||||||| | ||| | | |||| | ||| ||| || || || || || Sbjct 6010 GATGTTTTGATGATTCC-TACTTTATTGACTGCAA--ATTCTGTATTTATTATCGCTTTT 5954 Query 160984 GTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATG 161043 | | ||| || || || || || || || |||||||| | || |||| || || | Sbjct 5953 ATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTT 5894 Query 161044 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 161103 ||||||||||| ||||| | |||||| |||| ||| ||||| ||||| ||| |||| Sbjct 5893 TATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCAT 5834 Query 161104 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 161163 || || || |||||||||||||| | | || || ||| | |||||||| ||||||| Sbjct 5833 TTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTAT 5774 Query 161164 CAACTCGTTGTGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGG 161221 |||| |||| | |||||| | |||| | || |||| |||||||||||||||||| Sbjct 5773 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGG 5716 Query 161222 AACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCC 161276 ||||| || |||||||| ||||||||||||||| || ||||| || ||||| Sbjct 5715 AACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 162396 GGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT 162455 || || || ||||||||||| || |||||||| || || | | | ||||| |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 162456 CGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTC 162514 || || |||||||| || ||| || || | | || ||||| ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588 Query 162515 AGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTG 162574 |||||| |||||||| || ||| ||| || ||||| ||||| |||| || || || Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 162575 GTTCTTCGCACC 162586 |||||| || || Sbjct 4649 GTTCTTTGCTCC 4660 >seq55772 Length=6464 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||| || || ||||| ||||| || || || ||||| |||||||||||| || || Sbjct 1368 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 1309 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | ||||| || || | || ||||| | || || || || || Sbjct 1308 GCATGCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCA 1249 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || || |||||| | || || | || || ||||| || ||||| || Sbjct 1248 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 1189 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 |||||||| ||||| ||| ||||||||| ||||| || ||| Sbjct 1188 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 1144 Score = 86.0 bits (94), Expect = 7e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||| || || ||||| ||||| || || || ||||| |||||||||||| || || Sbjct 3836 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 3777 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | ||||| || || | || ||||| | | || || || || Sbjct 3776 GCATGCTCTACCTGTGCTGGGAAGATTGTATCTGGTTCATTGGATCAGTCTGATGGCTCA 3717 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || || |||||| | || || | || || ||||| || ||||| || Sbjct 3716 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 3657 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 |||||||| ||||| ||| ||||||||| ||||| || ||| Sbjct 3656 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 3612 >seq76780 Length=5561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 162264 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 162322 || ||||| ||| | || || ||||| ||| | || || |||||||| ||||| || | Sbjct 411 GCAAGTTCTTATTTAGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCCACTCCCGCTAA 353 Query 162323 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 162382 | | | || ||| | || | || ||||||||||| | || || | || | | | Sbjct 352 TAGTTTAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTTACCTG 293 Query 162383 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 162442 ||||| || | || || || ||||||||||| || ||||||| || || | | | || Sbjct 292 TTGGTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGATTAAT 233 Query 162443 AGGTTTCATGCTTCGCCAGTTTGAACT 162469 |||||||||| | || | |||||||| Sbjct 232 AGGTTTCATGTTACGTTAATTTGAACT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546213268200600