Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq80997 210 7e-50 seq95291 192 2e-44 >seq80997 Length=4773 Score = 210 bits (232), Expect = 7e-50 Identities = 283/394 (72%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 18424 AATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTC 18483 |||| |||||| |||||| || |||||||| || | | ||||||||||||| | || | Sbjct 4729 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGAC 4670 Query 18484 CCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGT 18543 ||||||| || | || | | ||||| | ||||| |||| ||| || || |||| Sbjct 4669 CCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 4610 Query 18544 TATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTG 18603 | ||||||||||| || | | || ||||||||||| || || || || | ||| || | Sbjct 4609 TGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAG 4550 Query 18604 CGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTG 18663 | ||| | || | || || || || ||||| ||||||||||| |||| | ||| | Sbjct 4549 CCGCAGAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAG 4490 Query 18664 AGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAA 18723 | |||||||||||||||||||| || || || ||||| ||||| | ||| || || | || Sbjct 4489 AAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAA 4430 Query 18724 ATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGA 18783 || | | || ||| || || | | ||| ||||| | || |||||||| || | ||| | Sbjct 4429 ATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAA 4370 Query 18784 GGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 | || || | || || || | ||| | ||| || Sbjct 4369 GACGATTTTCGGTGCTGGTTATCCAATTACAGAA 4336 >seq95291 Length=6073 Score = 192 bits (212), Expect = 2e-44 Identities = 267/374 (71%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 18417 GGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCAT 18476 || || ||||| |||||| |||||| || |||||||| || | | ||||||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 18477 TGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGT 18536 | || |||||||| || | || | | ||||| | ||||| |||| ||| || Sbjct 5721 TCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 5780 Query 18537 CCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGA 18596 || ||||| ||||||||||| || | | || ||||||||||| || || || || | | Sbjct 5781 CCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAA 5840 Query 18597 CCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAG 18656 || || || ||| | || | || || || | ||||| ||||||||||| |||| Sbjct 5841 CCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAGA 5900 Query 18657 GCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCA 18716 | ||| || ||| |||||||||||||||| || || || ||||| ||||| | ||| || Sbjct 5901 GATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCG 5960 Query 18717 ATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCC 18776 || | |||| | | | ||| || || | | ||| ||||| | || ||||||| || Sbjct 5961 ATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATCCA 6020 Query 18777 ACGTAGAGGCGGTT 18790 | ||| || || || Sbjct 6021 ATGTAAAGACGATT 6034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150915830164290