Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 210 7e-50
seq95291 192 2e-44
>seq80997
Length=4773
Score = 210 bits (232), Expect = 7e-50
Identities = 283/394 (72%), Gaps = 0/394 (0%)
Strand=Plus/Minus
Query 18424 AATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTC 18483
|||| |||||| |||||| || |||||||| || | | ||||||||||||| | || |
Sbjct 4729 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGAC 4670
Query 18484 CCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGT 18543
||||||| || | || | | ||||| | ||||| |||| ||| || || ||||
Sbjct 4669 CCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 4610
Query 18544 TATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTG 18603
| ||||||||||| || | | || ||||||||||| || || || || | ||| || |
Sbjct 4609 TGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAG 4550
Query 18604 CGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTG 18663
| ||| | || | || || || || ||||| ||||||||||| |||| | ||| |
Sbjct 4549 CCGCAGAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAG 4490
Query 18664 AGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAA 18723
| |||||||||||||||||||| || || || ||||| ||||| | ||| || || | ||
Sbjct 4489 AAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAA 4430
Query 18724 ATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGA 18783
|| | | || ||| || || | | ||| ||||| | || |||||||| || | ||| |
Sbjct 4429 ATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAA 4370
Query 18784 GGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817
| || || | || || || | ||| | ||| ||
Sbjct 4369 GACGATTTTCGGTGCTGGTTATCCAATTACAGAA 4336
>seq95291
Length=6073
Score = 192 bits (212), Expect = 2e-44
Identities = 267/374 (71%), Gaps = 0/374 (0%)
Strand=Plus/Plus
Query 18417 GGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCAT 18476
|| || ||||| |||||| |||||| || |||||||| || | | |||||||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 18477 TGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGT 18536
| || |||||||| || | || | | ||||| | ||||| |||| ||| ||
Sbjct 5721 TCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 5780
Query 18537 CCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGA 18596
|| ||||| ||||||||||| || | | || ||||||||||| || || || || | |
Sbjct 5781 CCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAA 5840
Query 18597 CCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAG 18656
|| || || ||| | || | || || || | ||||| ||||||||||| ||||
Sbjct 5841 CCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAGA 5900
Query 18657 GCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCA 18716
| ||| || ||| |||||||||||||||| || || || ||||| ||||| | ||| ||
Sbjct 5901 GATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCG 5960
Query 18717 ATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCC 18776
|| | |||| | | | ||| || || | | ||| ||||| | || ||||||| ||
Sbjct 5961 ATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATCCA 6020
Query 18777 ACGTAGAGGCGGTT 18790
| ||| || || ||
Sbjct 6021 ATGTAAAGACGATT 6034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150915830164290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |