Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq80997 196 6e-45 seq95291 172 7e-38 seq13836 111 2e-19 seq78999 102 1e-16 seq221580 87.8 2e-12 >seq80997 Length=4773 Score = 196 bits (216), Expect = 6e-45 Identities = 295/413 (71%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780 || |||| |||||| || | | || || ||||| |||| | ||||| ||| ||| Sbjct 4772 GGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAATC 4713 Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATG 103840 || || ||||| |||||||| | | |||||||||||| ||||| || ||| || | Sbjct 4712 CAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCA-AGCTA 4655 Query 103841 C--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCAT 103898 | ||| | |||||| | || | |||| ||||||| ||||| || | |||||||| Sbjct 4654 CACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCAT 4595 Query 103899 CAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAA 103958 ||| ||| ||||||||||| || ||||| || || | ||| || || || | |||| Sbjct 4594 CAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAA 4535 Query 103959 CAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAA 104018 || |||||||| ||||| ||||| || || | || || |||| || || ||||||| Sbjct 4534 TAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAA 4475 Query 104019 TGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCC 104077 | || || ||||| || ||||| || || | ||||| | || || |||| ||||| Sbjct 4474 TACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGA-AGTTGCA 4416 Query 104078 GCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTT 104130 | ||| | ||| || ||||||| ||||| ||||| |||| || ||||| || Sbjct 4415 GTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 4363 >seq95291 Length=6073 Score = 172 bits (190), Expect = 7e-38 Identities = 292/414 (71%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 103757 GGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCAC 103816 ||||| || ||||| ||| ||||| || ||||| |||||||| | | ||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 103817 TCACGTCCCATATATGCATAG--ATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAG 103874 ||||| ||||| || ||| || | |||| | |||||| | || | |||| ||| Sbjct 5721 TCACGACCCATGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAG 5778 Query 103875 GACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAA 103934 |||| ||||| || | ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 5779 GACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCA 5838 Query 103935 GACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGA 103994 ||| || || || | |||| || |||||| | ||||| ||||| || || | | Sbjct 5839 AACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTA 5898 Query 103995 GTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAG 104054 | || |||| || | |||||||| || || ||||| || ||||| || || | |||| Sbjct 5899 GAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAG 5958 Query 104055 CAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAA 104113 | | || || |||| |||| | ||| | ||| || ||||||| ||| | ||||| Sbjct 5959 CGATAATAAATACAGA-ATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017 Query 104114 CCAACATAGAGACGGTTGTTTGTCGAT-GTAACCCACTCGCAGAAGTTATCCCA 104166 |||| || ||||| || || | | | || | ||| | ||||||| | |||| Sbjct 6018 CCAATGTAAAGACGATT-TTCGATGTTGGTTATCCAATTACAGAAGTGACCCCA 6070 >seq13836 Length=10167 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 102253 GGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACA 102312 || ||||||||||||| ||||| || || ||||| || || || ||| ||||||||| Sbjct 4660 GGAGCAAAGAACCAACCAGACTGACCCAGTGGATAAATAAGGAATACAAAAACAAAAACA 4601 Query 102313 GCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAAC 102372 || || || || ||||| || | ||||| || || || | | || | | ||| | Sbjct 4600 GCAATTGGACCTGAGAATGCGGTTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGT 4541 Query 102373 TCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCC 102432 || |||||||| | |||||| || || | | || |||||||||||||| ||||||| | Sbjct 4540 TCAAATTGACGTAACATGAACCCTATTAATCCGAAAGCACCGTGGAGAGCAACAAAAGTC 4481 Query 102433 CAGAGTCCCCC 102443 || || || || Sbjct 4480 CACAGACCGCC 4470 >seq78999 Length=659 Score = 102 bits (112), Expect = 1e-16 Identities = 209/308 (68%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||| ||| || ||| | ||||||| || |||| || ||||||||| | | ||| Sbjct 16 AGAGTGTTTCCATGTGGTAGAACCTCTTTAGCGAATATAAGGTTTTCATGAAGCTAATCT 75 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||| ||| |||| | |||||| || || | || | || |||||||| ||| Sbjct 76 TGAACTCCCATCCACCCACGAATACCTTCGTTTAAGAAAATACTTTTGGTGTAGAAAGTC 135 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || | |||||||||||| | | || |||| || ||||||||||||||||| ||| Sbjct 136 TCAAA-TAAGGATCTTCTGCTCCACGAATTTCTTTAGAAACAAAGTCATAAGCACGTAGG 194 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || || || | || || | || | | | | ||| | ||| | || || ||||| Sbjct 195 TTTAGGGCCAAACTAACTACCCCAAAAGTAATGATCCGTAAACCAGTTACTGGTACAAAT 254 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||| || || | ||||| | ||||| || |||| |||||||| ||||| Sbjct 255 AACATACAG-AACGTAACCAACATTTATTGAAGAAAGCAACCTTAAAGATTTATGACCAA 313 Query 102010 AAACGGTT 102017 || || || Sbjct 314 AAGCGATT 321 >seq221580 Length=2368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 ||| || || ||||||| || || || |||| ||||| |||| || | || || Sbjct 1770 ATCTGATGTCGGGTATGAGACACATGTGAGAAGGTAACCTTTCTCTATCTGCTGTTCTTC 1711 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAA-TCTTACCAGCACAAGTAG 102932 ||||| ||||||||| ||||| |||| ||| || || | |||| ||||||||||||| Sbjct 1710 AAGAAAAGATTGATCTGACTGATCCACAGCACCTGAATCCAGTCTT-CCAGCACAAGTAG 1652 Query 102933 AACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTA 102992 | || || ||||| | || || || || || || | || || || ||||| | || | Sbjct 1651 AGCATGCTCCAGCTCTGCATGAGTATGGTAGTTCCAATCCAGCCTCTTCAGCTGAATCCA 1592 Query 102993 GAATATA 102999 |||| || Sbjct 1591 GAATGTA 1585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631739484757800