Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq80997 163 8e-36 seq95291 140 9e-29 >seq80997 Length=4773 Score = 163 bits (180), Expect = 8e-36 Identities = 288/414 (70%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076 ||||| | | ||| |||| ||| || || | ||| |||| | || |||||| ||| Sbjct 4772 GGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAATC 4713 Query 22077 CAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-AC 22135 || || | ||| || || ||| | |||||||||||||| || |||||||| |||| || Sbjct 4712 CAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCAAGCTAC 4654 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 |||| | |||||| | || | |||| | |||||||||||||| | ||| ||||| Sbjct 4653 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCATC 4594 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 || | ||| |||||||| || || || || || | || || || | | |||| Sbjct 4593 AACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAAT 4534 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | || || || ||||| ||||| ||||| | || || |||| || || || || || Sbjct 4533 AATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAAT 4474 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGC 22372 ||||| || || || || || || | | ||| ||||||||||| | |||||| | Sbjct 4473 ACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCA-- 4416 Query 22373 GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | ||| | | | |||||||| | || || |||||||| | |||||||| || Sbjct 4415 GTCAATAAAGTA-GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 4363 >seq95291 Length=6073 Score = 140 bits (154), Expect = 9e-29 Identities = 261/378 (69%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 22053 GGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCAC 22112 ||||| || || |||||| ||||| || | ||| || || ||| | |||||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 22113 TCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGG 22171 || || ||||||| ||||| || |||| | |||||| | || | |||| | || Sbjct 5721 TCACGACCCATGT-AGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5779 Query 22172 ACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAG 22231 |||||||||||| | ||| ||||||| | ||| |||||||| || || || || || | Sbjct 5780 ACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAA 5839 Query 22232 TCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAG 22291 || || || | | |||| | || || | ||||| ||||| ||||| | || Sbjct 5840 ACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAG 5899 Query 22292 GGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGC 22351 || |||| || | || || || ||||| || || || || || || | | ||| || Sbjct 5900 AGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGC 5959 Query 22352 GATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 ||||||||| | || ||| | | ||| | | | |||||||| | || | ||||| Sbjct 5960 GATAATAAATACAGAATTTGCA--GTCAATAAAGTA-GGAATCATCAAAACATCAAACCA 6016 Query 22409 TCCTACATAAAGACGGTT 22426 ||| | |||||||| || Sbjct 6017 TCCAATGTAAAGACGATT 6034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145819025952300