Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 163 8e-36
seq95291 140 9e-29
>seq80997
Length=4773
Score = 163 bits (180), Expect = 8e-36
Identities = 288/414 (70%), Gaps = 8/414 (2%)
Strand=Plus/Minus
Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076
||||| | | ||| |||| ||| || || | ||| |||| | || |||||| |||
Sbjct 4772 GGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAATC 4713
Query 22077 CAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-AC 22135
|| || | ||| || || ||| | |||||||||||||| || |||||||| |||| ||
Sbjct 4712 CAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCAAGCTAC 4654
Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195
|||| | |||||| | || | |||| | |||||||||||||| | ||| |||||
Sbjct 4653 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCATC 4594
Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255
|| | ||| |||||||| || || || || || | || || || | | ||||
Sbjct 4593 AACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAAT 4534
Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315
| || || || ||||| ||||| ||||| | || || |||| || || || || ||
Sbjct 4533 AATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAAT 4474
Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGC 22372
||||| || || || || || || | | ||| ||||||||||| | |||||| |
Sbjct 4473 ACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCA-- 4416
Query 22373 GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426
| ||| | | | |||||||| | || || |||||||| | |||||||| ||
Sbjct 4415 GTCAATAAAGTA-GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 4363
>seq95291
Length=6073
Score = 140 bits (154), Expect = 9e-29
Identities = 261/378 (69%), Gaps = 8/378 (2%)
Strand=Plus/Plus
Query 22053 GGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCAC 22112
||||| || || |||||| ||||| || | ||| || || ||| | ||||||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 22113 TCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGG 22171
|| || ||||||| ||||| || |||| | |||||| | || | |||| | ||
Sbjct 5721 TCACGACCCATGT-AGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5779
Query 22172 ACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAG 22231
|||||||||||| | ||| ||||||| | ||| |||||||| || || || || || |
Sbjct 5780 ACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAA 5839
Query 22232 TCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAG 22291
|| || || | | |||| | || || | ||||| ||||| ||||| | ||
Sbjct 5840 ACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAG 5899
Query 22292 GGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGC 22351
|| |||| || | || || || ||||| || || || || || || | | ||| ||
Sbjct 5900 AGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGC 5959
Query 22352 GATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408
||||||||| | || ||| | | ||| | | | |||||||| | || | |||||
Sbjct 5960 GATAATAAATACAGAATTTGCA--GTCAATAAAGTA-GGAATCATCAAAACATCAAACCA 6016
Query 22409 TCCTACATAAAGACGGTT 22426
||| | |||||||| ||
Sbjct 6017 TCCAATGTAAAGACGATT 6034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145819025952300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |