Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 219 6e-52
seq95291 201 2e-46
seq13836 141 1e-28
seq55772 129 8e-25
seq78999 123 3e-23
>seq80997
Length=4773
Score = 219 bits (242), Expect = 6e-52
Identities = 319/442 (72%), Gaps = 8/442 (2%)
Strand=Plus/Minus
Query 27279 AGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGAT 27338
|||||||| | ||| || | | | || || | || |||| ||||||| ||| ||
Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714
Query 27339 CCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGAT 27398
||| ||||||||||| | |||| | |||||||||||||| ||||| || ||| || |
Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCA-AGCT 4656
Query 27399 GC--CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCA 27456
| | | | |||||| | || | |||| ||||||| ||||| || |||||||||
Sbjct 4655 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCA 4596
Query 27457 TCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGG 27516
|| | || |||||||||||||| || || || || | ||| || || ||| | ||
Sbjct 4595 TCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGA 4536
Query 27517 ACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGA 27576
| || |||||||||||||| ||||| ||||| | || || |||| ||| || ||||||
Sbjct 4535 ATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGA 4476
Query 27577 ATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGC 27635
||||| |||||||| || || || || ||||| || |||| ||| || |||| ||||||
Sbjct 4475 ATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGA-AGTTGC 4417
Query 27636 TGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGT 27695
| || | || || ||||||| ||||| ||||| |||| || | ||| || || |
Sbjct 4416 AGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT-TTCGG 4358
Query 27696 TGAT-GTCACCCACTCACAGAA 27716
|| | || | ||| | ||||||
Sbjct 4357 TGCTGGTTATCCAATTACAGAA 4336
>seq95291
Length=6073
Score = 201 bits (222), Expect = 2e-46
Identities = 293/405 (72%), Gaps = 8/405 (2%)
Strand=Plus/Plus
Query 27316 GGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCAC 27375
||||| |||||||| ||| ||||| ||||||||||| | |||| | |||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 27376 TCACGTCCCATATAAGCATAGATGC--CGATAAGGAAGTGGAAGACTACCAGTTGGAAAG 27433
||||| ||||| || ||| || | | | | | |||||| | || | |||| |||
Sbjct 5721 TCACGACCCATGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAG 5778
Query 27434 GACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGA 27493
|||| ||||| || ||||||||||| | || |||||||||||||| || || || || |
Sbjct 5779 GACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCA 5838
Query 27494 GACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAA 27553
||| || || ||| | || | || |||||| ||||||| ||||| ||||| | |
Sbjct 5839 AACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTA 5898
Query 27554 GTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATG 27613
| || |||| ||| | ||||||||||| |||||||| || || || || ||||| || |
Sbjct 5899 GAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAG 5958
Query 27614 CGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAA 27672
||| ||| || |||| | |||| | || | || || ||||||| ||| | |||||
Sbjct 5959 CGATAATAAATACAGA-ATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017
Query 27673 CCAACATACAAACGGTTGTTAGTTGAT-GTCACCCACTCACAGAA 27716
|||| || | ||| || || | || | || | ||| | ||||||
Sbjct 6018 CCAATGTAAAGACGATT-TTCGATGTTGGTTATCCAATTACAGAA 6061
>seq13836
Length=10167
Score = 141 bits (156), Expect = 1e-28
Identities = 151/197 (77%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 23929 AACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGA 23988
|||| || |||||||||||| ||||| |||| ||||| || ||||||||| | || |
Sbjct 4665 AACTTGGAGCAAAGAACCAACCAGACTGACCCAGTGGATAAATAAGGAATACAAAAACAA 4606
Query 23989 ATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGT 24047
| |||||||| ||||| || || || | ||||| || || || | | || ||| ||
Sbjct 4605 AAACAGCAATTGGACCTGAGAATGCGGTTGCATTATAAGGTCGCAATTGAAC-AGATCGA 4547
Query 24048 GCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACA 24107
|| |||||||| ||||||||||| || ||||| | | | || ||||||||||||||||||
Sbjct 4546 GCAAGTTCAAATTGACGTAACATGAACCCTATTAATCCGAAAGCACCGTGGAGAGCAACA 4487
Query 24108 AAGGACCAAAGCCCTCC 24124
|| | ||| || || ||
Sbjct 4486 AAAGTCCACAGACCGCC 4470
>seq55772
Length=6464
Score = 129 bits (142), Expect = 8e-25
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 32608 TCAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAAC 32667
||||||||||| |||| | | ||||||||||| | ||| | ||||||||| | ||
Sbjct 1144 TCAGTAGAGTTCTCCTTCCTTGTGAGTTTCAATTACACAATCTGCAGTTGGATAGGAGAC 1203
Query 32668 ACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTG 32727
||| || || | ||| |||||| | ||||| ||||| | ||| || |||| ||
Sbjct 1204 ACAGGTAAGTAGAAATCCTTCTCCCATTTGGGTGTCATCAAGGAATGAGCCATCAGACTG 1263
Query 32728 GTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGA 32787
|| |||| |||||| |||||||| || ||||| | || || || || || || || ||
Sbjct 1264 ATCCACTGAACCAGAAACAATCTTCCCAGCACAGGTAGAGCATGCTCCGGCGCGGCACGA 1323
Query 32788 GTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATC 32841
||| | ||||| ||| | |||||||||||||| || ||||| ||||||
Sbjct 1324 GTAAGGAAGTTCAACTCCAGCATCCTCTGCTGCATCTAGAATGTAGGTATCATC 1377
Score = 129 bits (142), Expect = 8e-25
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 32608 TCAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAAC 32667
||||||||||| |||| | | ||||||||||| | ||| | ||||||||| | ||
Sbjct 3612 TCAGTAGAGTTCTCCTTCCTTGTGAGTTTCAATTACACAATCTGCAGTTGGATAGGAGAC 3671
Query 32668 ACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTG 32727
||| || || | ||| |||||| | ||||| ||||| | ||| || |||| ||
Sbjct 3672 ACAGGTAAGTAGAAATCCTTCTCCCATTTGGGTGTCATCAAGGAATGAGCCATCAGACTG 3731
Query 32728 GTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGA 32787
|| | || ||||||||||||||| || ||||| | || || || || || || || ||
Sbjct 3732 ATCCAATGAACCAGATACAATCTTCCCAGCACAGGTAGAGCATGCTCCGGCGCGGCACGA 3791
Query 32788 GTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATC 32841
||| | ||||| ||| | |||||||||||||| || ||||| ||||||
Sbjct 3792 GTAAGGAAGTTCAACTCCAGCATCCTCTGCTGCATCTAGAATGTAGGTATCATC 3845
>seq78999
Length=659
Score = 123 bits (136), Expect = 3e-23
Identities = 173/240 (72%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518
|||||| |||| | || | ||| || |||||| |||| |||||||| |||||| | |
Sbjct 84 CATCCACCCACGAATACCTTCGTTTAAGAAAATACTTTTGGTGTAGAAAGTCTCAAAT-A 142
Query 23519 ACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGC 23578
| |||||| || ||||||| |||| | ||||| ||||||||||| || || || ||
Sbjct 143 AGGATCTTCTGCTCCACGAATTTCTTTAGAAACAAAGTCATAAGCACGTAGGTTTAGGGC 202
Query 23579 AAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAA 23638
| | || | |||| || | || || | ||| | || || ||||| |||||| |
Sbjct 203 CAAACTAACTACCCCAAAAGTAATGATCCGTAAACCAGTTACTGGTACAAATAACATACA 262
Query 23639 GAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATT 23698
||| | ||||||| |||||| || |||||| ||||||| ||||||||| |||||
Sbjct 263 GAA-CGTAACCAACATTTATTGAAGAAAGCAACCTTAAAGATTTATGACCAAAAGCGATT 321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 663630724526200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |