Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq80997 163 3e-35 seq95291 145 9e-30 >seq80997 Length=4773 Score = 163 bits (180), Expect = 3e-35 Identities = 252/360 (70%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACC 8540 |||||| ||| ||||| || | |||||| | || | | ||||||| | ||| Sbjct 4728 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACC 4669 Query 8541 CATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 |||||| || | |||| | |||||| | | || | | ||| ||||| ||||| Sbjct 4668 CATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 4609 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 || ||||||||||| | | || |||||||| || ||||| || || || || ||||| Sbjct 4608 GTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGC 4549 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 |||| |||| | |||||||| ||||| ||||||||||| | | || || | Sbjct 4548 CGCAGAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGA 4489 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||||| ||||||||||| || ||||| || || || ||||| ||||| || | ||||| Sbjct 4488 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAA 4429 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 || || |||| || || ||||||||| | ||| |||||||| || | ||||| Sbjct 4428 TACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAG 4369 >seq95291 Length=6073 Score = 145 bits (160), Expect = 9e-30 Identities = 253/368 (69%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 8473 GGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCAC 8532 ||||| |||||| ||| ||||| || | |||||| | || | | |||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 8533 TGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGA 8592 | | ||||||||| || | |||| | |||||| | | || | | ||| ||| Sbjct 5721 TCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 5780 Query 8593 CCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAAT 8652 || ||||| || ||||||||||| | | || |||||||| || ||||| || || || Sbjct 5781 CCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAA 5840 Query 8653 CCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAAT 8712 || ||||| |||| |||| | |||||| | ||||| ||||||||||| | | Sbjct 5841 CCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAGA 5900 Query 8713 GAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCC 8772 || || | |||| | ||||||||||| || ||||| || || || ||||| ||||| || Sbjct 5901 GATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCG 5960 Query 8773 ACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCG 8832 | ||||| || | |||| || || ||||||||| | ||| ||||||| || Sbjct 5961 ATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATCCA 6020 Query 8833 ACATAAAG 8840 | ||||| Sbjct 6021 ATGTAAAG 6028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614137715840200