Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 228 9e-55
seq95291 206 3e-48
seq13836 100 3e-16
>seq80997
Length=4773
Score = 228 bits (252), Expect = 9e-55
Identities = 292/400 (73%), Gaps = 2/400 (1%)
Strand=Plus/Plus
Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827
|||||| | ||| | |||||||| | || ||||| || | || ||||||||| |
Sbjct 4335 CTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 4394
Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886
||||||||| ||| | ||| | |||||| |||| || || |||| || |||||||| |
Sbjct 4395 GATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453
Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946
| || || || || || || || ||||| || || |||| ||||| | ||||| ||||
Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513
Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006
| ||||| |||||||| || |||| |||| || || ||| | || || ||||| |
Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573
Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066
|||||||||| || || |||| || ||| | || ||||| ||||||| |||| |||
Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633
Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126
| | |||||| | |||| | | |||||||||||||||||||||||| || |
Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 4693
Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGC 166166
|||| ||||||||||| ||||| |||||| || | |||
Sbjct 4694 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGC 4733
>seq95291
Length=6073
Score = 206 bits (228), Expect = 3e-48
Identities = 289/403 (72%), Gaps = 2/403 (0%)
Strand=Plus/Minus
Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827
|||||| | ||| | |||| || | || ||||| || | || ||||||| | |
Sbjct 6062 CTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTT 6003
Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886
||||||||| ||| | ||| | |||| | |||| || || |||| || |||||||| |
Sbjct 6002 GATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 5944
Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946
| || || || || || || || ||||| | || |||| ||||| | ||||| ||||
Sbjct 5943 CTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACA 5884
Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006
| ||||| | |||||| || |||| |||| || || ||| | || || ||||| |
Sbjct 5883 ATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 5824
Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066
|||||||||| || || |||| || ||| | || ||||| ||||||| |||| |||
Sbjct 5823 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 5764
Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126
| | |||||| | |||| | | |||||||||||||||||||||||| || |
Sbjct 5763 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 5704
Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACC 166169
|||| ||||||||||| ||||| |||||| || ||||| ||
Sbjct 5703 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 167293 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT 167352
|| || || ||| ||||||| || |||||||| || || | | || || |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 167353 CGACAGTTTGAACTTGCTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTC 167411
|| || |||||||||||||| ||| | | | || || || ||||| | || |||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588
Query 167412 TGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTG 167471
||||| |||||||| || ||| || |||||| | ||||| || ||||| | ||
Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648
Query 167472 GTTCTTTGCCCC 167483
||||||||| ||
Sbjct 4649 GTTCTTTGCTCC 4660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559676260054000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |