Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq80997 228 9e-55 seq95291 206 3e-48 seq13836 100 3e-16 >seq80997 Length=4773 Score = 228 bits (252), Expect = 9e-55 Identities = 292/400 (73%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | |||||||| | || ||||| || | || ||||||||| | Sbjct 4335 CTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 4394 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 ||||||||| ||| | ||| | |||||| |||| || || |||| || |||||||| | Sbjct 4395 GATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| || || |||| ||||| | ||||| |||| Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | ||||| |||||||| || |||| |||| || || ||| | || || ||||| | Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 |||||||||| || || |||| || ||| | || ||||| ||||||| |||| ||| Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | |||||||||||||||||||||||| || | Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 4693 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGC 166166 |||| ||||||||||| ||||| |||||| || | ||| Sbjct 4694 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGC 4733 >seq95291 Length=6073 Score = 206 bits (228), Expect = 3e-48 Identities = 289/403 (72%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | |||| || | || ||||| || | || ||||||| | | Sbjct 6062 CTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTT 6003 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 ||||||||| ||| | ||| | |||| | |||| || || |||| || |||||||| | Sbjct 6002 GATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 5944 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| | || |||| ||||| | ||||| |||| Sbjct 5943 CTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACA 5884 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | ||||| | |||||| || |||| |||| || || ||| | || || ||||| | Sbjct 5883 ATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 5824 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 |||||||||| || || |||| || ||| | || ||||| ||||||| |||| ||| Sbjct 5823 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 5764 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | |||||||||||||||||||||||| || | Sbjct 5763 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 5704 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACC 166169 |||| ||||||||||| ||||| |||||| || ||||| || Sbjct 5703 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 167293 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT 167352 || || || ||| ||||||| || |||||||| || || | | || || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 167353 CGACAGTTTGAACTTGCTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTC 167411 || || |||||||||||||| ||| | | | || || || ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588 Query 167412 TGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTG 167471 ||||| |||||||| || ||| || |||||| | ||||| || ||||| | || Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 167472 GTTCTTTGCCCC 167483 ||||||||| || Sbjct 4649 GTTCTTTGCTCC 4660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559676260054000