Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 163 8e-36
seq95291 140 9e-29
>seq80997
Length=4773
Score = 163 bits (180), Expect = 8e-36
Identities = 288/414 (70%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320
|| |||||||| | |||||||| || || | |||||||| | | | ||| | | ||
Sbjct 4363 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACTTTATTGAC--TGCA 4419
Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377
|||| | ||||||||||| ||| | | || || || || || || ||||| || ||
Sbjct 4420 ACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 4479
Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437
|| || || |||| || || | ||||| ||||| ||||| || || || | ||||
Sbjct 4480 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCT 4539
Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497
| | || || || | || || || || || |||||||| ||| | |||||||
Sbjct 4540 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 4599
Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTT 41556
||| | |||||||||||||| | |||| | || | |||||| | |||| || |
Sbjct 4600 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 4659
Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616
||| |||||||| || |||||||||||||| | ||| || || ||| | || |||||
Sbjct 4660 TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGC 4718
Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCC 41670
|||||| || | |||| ||| | || || ||| |||| ||| | | |||||
Sbjct 4719 TGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCC 4772
>seq95291
Length=6073
Score = 140 bits (154), Expect = 9e-29
Identities = 261/378 (69%), Gaps = 8/378 (2%)
Strand=Plus/Minus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320
|| |||||||| | |||||||| | || | |||||||| | | | ||| | | ||
Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCC-TACTTTATTGAC--TGCA 5978
Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377
| || | ||||||||||| ||| | | || || || || || || ||||| || ||
Sbjct 5977 AATTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 5918
Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437
|| | || |||| || || | ||||| ||||| ||||| | || || | ||||
Sbjct 5917 GAGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCT 5858
Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497
| | || || || | || || || || || |||||||| ||| | |||||||
Sbjct 5857 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 5798
Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-T 41556
||| | |||||||||||||| | |||| | || | |||||| | |||| || |
Sbjct 5797 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 5738
Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616
|||| ||||||| || |||||||||||||| | ||| || || ||| | || |||||
Sbjct 5737 TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGC 5679
Query 41617 TGTTGCGTACTCTGCTCC 41634
|||||| || || |||||
Sbjct 5678 TGTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145825408925640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |