Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq80997 163 8e-36 seq95291 140 9e-29 >seq80997 Length=4773 Score = 163 bits (180), Expect = 8e-36 Identities = 288/414 (70%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 || |||||||| | |||||||| || || | |||||||| | | | ||| | | || Sbjct 4363 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACTTTATTGAC--TGCA 4419 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | ||||||||||| ||| | | || || || || || || ||||| || || Sbjct 4420 ACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 4479 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || |||| || || | ||||| ||||| ||||| || || || | |||| Sbjct 4480 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCT 4539 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || || || | || || || || || |||||||| ||| | ||||||| Sbjct 4540 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 4599 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTT 41556 ||| | |||||||||||||| | |||| | || | |||||| | |||| || | Sbjct 4600 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 4659 Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616 ||| |||||||| || |||||||||||||| | ||| || || ||| | || ||||| Sbjct 4660 TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGC 4718 Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCC 41670 |||||| || | |||| ||| | || || ||| |||| ||| | | ||||| Sbjct 4719 TGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCC 4772 >seq95291 Length=6073 Score = 140 bits (154), Expect = 9e-29 Identities = 261/378 (69%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 || |||||||| | |||||||| | || | |||||||| | | | ||| | | || Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCC-TACTTTATTGAC--TGCA 5978 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 | || | ||||||||||| ||| | | || || || || || || ||||| || || Sbjct 5977 AATTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 5918 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || | || |||| || || | ||||| ||||| ||||| | || || | |||| Sbjct 5917 GAGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCT 5858 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || || || | || || || || || |||||||| ||| | ||||||| Sbjct 5857 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 5798 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-T 41556 ||| | |||||||||||||| | |||| | || | |||||| | |||| || | Sbjct 5797 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 5738 Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616 |||| ||||||| || |||||||||||||| | ||| || || ||| | || ||||| Sbjct 5737 TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGC 5679 Query 41617 TGTTGCGTACTCTGCTCC 41634 |||||| || || ||||| Sbjct 5678 TGTTGCATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145825408925640