Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq80997 205 3e-48 seq95291 179 1e-40 >seq80997 Length=4773 Score = 205 bits (226), Expect = 3e-48 Identities = 315/447 (70%), Gaps = 2/447 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || || | || |||||||| |||| |||||| Sbjct 4327 TGGGGTCGCTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTT 4386 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | |||| || | ||| |||||| ||||||| || Sbjct 4387 GGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTAT 4445 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||| || || Sbjct 4446 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTA 4505 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| |||||||| | | |||| | || || || | ||||| Sbjct 4506 TGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 4565 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| ||||||||||||| | | |||| || ||| | ||||| ||||| |||||| | Sbjct 4566 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 4625 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | |||||| | | ||| | | ||| |||| || || |||||||| Sbjct 4626 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 4685 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | || || || ||| | || ||||| |||||| || | || | ||| | || Sbjct 4686 TAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGC 4745 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCC 42725 || ||| | || ||| | ||||||| Sbjct 4746 CGCTACTACTGTTTTCTTGATCTATCC 4772 >seq95291 Length=6073 Score = 179 bits (198), Expect = 1e-40 Identities = 288/411 (70%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| ||| || ||||| ||| | || | | || |||||||| |||| |||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 | ||| |||||||||| | | | |||| | | ||| |||||| ||||||| || Sbjct 6010 GATGTTTTGATGATTCCTACTTTATTGACTGCAAATTC-TGTATTTATTATCGCTTTTAT 5952 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||||||||| ||||| |||||||| |||||||| | ||| ||||| ||||| || || Sbjct 5951 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTA 5892 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| | |||||| | | |||| | || || || | ||||| Sbjct 5891 TGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 5832 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| ||||||||||||| | | |||| || ||| | ||||| ||||| |||||| | Sbjct 5831 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 5772 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | |||||| | | ||| | | ||| |||| || || |||||||| Sbjct 5771 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 5712 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCC 42689 | | || || || ||| | || ||||| |||||| || || || || Sbjct 5711 TAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143150943096180