Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 161 3e-35
seq95291 141 3e-29
>seq80997
Length=4773
Score = 161 bits (178), Expect = 3e-35
Identities = 277/396 (70%), Gaps = 6/396 (2%)
Strand=Plus/Minus
Query 26467 ATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCC 26526
|||||||||| ||||| || | ||| || || | || |||||||||| | ||
Sbjct 4728 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACC 4669
Query 26527 TGCATAT-GCT-GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCA 26584
||| | || ||||| || | ||||||||| | | ||| |||| ||| || |||||
Sbjct 4668 --CATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCG 4611
Query 26585 TTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATT 26644
||||||| |||||| || | | | |||||||||||||| |||||||| | || ||
Sbjct 4610 TTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATA 4551
Query 26645 GCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCG 26704
|| ||| | || | | || || || || ||||||||||| || | || || ||
Sbjct 4550 GCCGCAGAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCA 4491
Query 26705 GAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATA 26764
||||| |||||||| || ||||| |||||||| || || || ||||| || || | |||
Sbjct 4490 GAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATA 4431
Query 26765 AA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATA 26823
|| ||| | ||| || | | ||| || ||||| | || || |||||||| | ||
Sbjct 4430 AATACA-GAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTA 4372
Query 26824 GAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859
||||| || || || || || | ||| | ||| ||
Sbjct 4371 AAGACGATTTTCGGTGCTGGTTATCCAATTACAGAA 4336
>seq95291
Length=6073
Score = 141 bits (156), Expect = 3e-29
Identities = 263/380 (69%), Gaps = 6/380 (2%)
Strand=Plus/Plus
Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518
|| |||| |||||||||| ||||| || | ||| || || | || |||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 26519 TGTCTCCCTGCATAT-GCT-GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATG 26576
| | || ||| | || ||||| || | ||||||||| | | ||| |||| ||| |
Sbjct 5721 TCACGACC--CATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAG 5778
Query 26577 GTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTA 26636
| ||||| ||||||| |||||| || | | | |||||||||||||| |||||||| |
Sbjct 5779 GACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCA 5838
Query 26637 GTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTA 26696
|| || || ||| | || | | || || | || ||||||||||| || | ||
Sbjct 5839 AACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTA 5898
Query 26697 ACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGG 26756
|| || ||||| ||||||| || ||||| |||||||| || || || ||||| || |
Sbjct 5899 GAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAG 5958
Query 26757 CAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCAT 26815
| | ||||| ||| | | | || | | ||| || ||||| | || | ||||||
Sbjct 5959 CGATAATAAATACA-GAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017
Query 26816 CCCACATAGAGACGGTTCTC 26835
|| | || ||||| || ||
Sbjct 6018 CCAATGTAAAGACGATTTTC 6037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147319024687200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |