Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq80997 161 3e-35 seq95291 141 3e-29 >seq80997 Length=4773 Score = 161 bits (178), Expect = 3e-35 Identities = 277/396 (70%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 26467 ATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCC 26526 |||||||||| ||||| || | ||| || || | || |||||||||| | || Sbjct 4728 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACC 4669 Query 26527 TGCATAT-GCT-GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCA 26584 ||| | || ||||| || | ||||||||| | | ||| |||| ||| || ||||| Sbjct 4668 --CATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCG 4611 Query 26585 TTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATT 26644 ||||||| |||||| || | | | |||||||||||||| |||||||| | || || Sbjct 4610 TTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATA 4551 Query 26645 GCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCG 26704 || ||| | || | | || || || || ||||||||||| || | || || || Sbjct 4550 GCCGCAGAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCA 4491 Query 26705 GAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATA 26764 ||||| |||||||| || ||||| |||||||| || || || ||||| || || | ||| Sbjct 4490 GAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATA 4431 Query 26765 AA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATA 26823 || ||| | ||| || | | ||| || ||||| | || || |||||||| | || Sbjct 4430 AATACA-GAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTA 4372 Query 26824 GAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || || || || | ||| | ||| || Sbjct 4371 AAGACGATTTTCGGTGCTGGTTATCCAATTACAGAA 4336 >seq95291 Length=6073 Score = 141 bits (156), Expect = 3e-29 Identities = 263/380 (69%), Gaps = 6/380 (2%) Strand=Plus/Plus Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || |||| |||||||||| ||||| || | ||| || || | || ||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 26519 TGTCTCCCTGCATAT-GCT-GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATG 26576 | | || ||| | || ||||| || | ||||||||| | | ||| |||| ||| | Sbjct 5721 TCACGACC--CATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAG 5778 Query 26577 GTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTA 26636 | ||||| ||||||| |||||| || | | | |||||||||||||| |||||||| | Sbjct 5779 GACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCA 5838 Query 26637 GTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTA 26696 || || || ||| | || | | || || | || ||||||||||| || | || Sbjct 5839 AACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTA 5898 Query 26697 ACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGG 26756 || || ||||| ||||||| || ||||| |||||||| || || || ||||| || | Sbjct 5899 GAGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAG 5958 Query 26757 CAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCAT 26815 | | ||||| ||| | | | || | | ||| || ||||| | || | |||||| Sbjct 5959 CGATAATAAATACA-GAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCAT 6017 Query 26816 CCCACATAGAGACGGTTCTC 26835 || | || ||||| || || Sbjct 6018 CCAATGTAAAGACGATTTTC 6037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147319024687200