Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq80997 199 5e-46 seq95291 190 2e-43 >seq80997 Length=4773 Score = 199 bits (220), Expect = 5e-46 Identities = 254/350 (73%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||| ||| | | |||| || | || ||| || Sbjct 4378 GGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATC 4437 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || || || ||||| ||||| ||||| ||||||||||||||||| || || |||| ||| Sbjct 4438 GCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCT 4497 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 || | ||||| ||||| ||||| |||||||| || | |||| ||| || || ||| Sbjct 4498 CTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGT 4557 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | || || ||||| || ||||||||||| || ||||||||||||| ||||| || ||| Sbjct 4558 TTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGT 4617 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 155310 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 4618 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAG 4677 Query 155311 TGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 155360 ||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct 4678 TGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 4727 >seq95291 Length=6073 Score = 190 bits (210), Expect = 2e-43 Identities = 227/308 (74%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||| || || ||||| ||||| ||||| ||||||||||||||||| | || Sbjct 5968 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTT 5909 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| ||| || | ||||| ||||| ||||| | |||||| || | |||| ||| Sbjct 5908 TCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCG 5849 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || ||| | || || ||||| || ||||||||||| || ||||||||||||| ||| Sbjct 5848 GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATAC 5789 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301 || || ||||||| |||| | || | |||||| | | || | | ||| Sbjct 5788 AACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATG 5729 Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct 5728 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 5669 Query 155362 TCTGCACC 155369 || || || Sbjct 5668 TCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583197405574600