Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq80997 214 5e-51 seq95291 187 7e-43 >seq80997 Length=4773 Score = 214 bits (236), Expect = 5e-51 Identities = 316/440 (72%), Gaps = 6/440 (1%) Strand=Plus/Minus Query 41079 GGATAAACTAAGAATACAGCTAG-AGCTGCTGACAATG-GAGCTGTGTATGCCACAAATA 41136 ||||| | ||||| |||| ||| ||| ||| |||| ||||| ||||| ||| | Sbjct 4772 GGATAGATCAAGAAAACAG-TAGTAGCGGCT-ACAACAAGAGCTAAATATGCAACAGCAA 4715 Query 41137 TCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTA 41196 |||| || | |||||| || | | ||||||||||| | ||| ||| |||| Sbjct 4714 TCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTA 4655 Query 41197 CTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGT 41256 | || | ||| ||||| | ||||| |||| ||| || ||||||||||||| |||||| | Sbjct 4654 CACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCAT 4595 Query 41257 CCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAA 41316 | | | | ||||||||||| || || ||||| | || || || ||| | |||| Sbjct 4594 CAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAA 4535 Query 41317 CGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTA 41376 | || ||||| || |||||||| || || | || || || ||||| |||||||| | Sbjct 4534 TAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAA 4475 Query 41377 TGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCA 41435 | ||||| |||||||| || || || |||||||| ||||| || || ||| | || ||| Sbjct 4474 TACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACA-GAAGTTGCA 4416 Query 41436 GTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTG 41495 || | ||| | |||||||| | ||||||||||| || | ||| || || || |||||| Sbjct 4415 GTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTG 4356 Query 41496 CTAGTGACCCAGTTACAAAA 41515 || || | ||| ||||| || Sbjct 4355 CTGGTTATCCAATTACAGAA 4336 >seq95291 Length=6073 Score = 187 bits (206), Expect = 7e-43 Identities = 284/402 (71%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 41115 GGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCAC 41174 ||||||| ||||| ||| ||||| || | |||||| || | | |||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 41175 TGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGT 41234 | | ||| ||| ||||| || | ||| ||||| | ||||| |||| ||| || Sbjct 5721 TCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 5780 Query 41235 CCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGT 41294 ||||||||||||| |||||| || | | | ||||||||||| || || ||||| | Sbjct 5781 CCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAA 5840 Query 41295 CCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAAC 41354 || || || ||| | |||| | || ||| | || |||||||| || || | || Sbjct 5841 CCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAGA 5900 Query 41355 GAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCG 41414 || || ||||| ||||||| || ||||| |||||||| || || || |||||||| ||| Sbjct 5901 GATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCG 5960 Query 41415 ATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACC 41473 || || || ||| | | ||||| | ||| | |||||||| | ||| ||||||| || Sbjct 5961 ATAATAAATACA-GAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATCC 6019 Query 41474 TACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||| || || || ||| || | || | ||| ||||| || Sbjct 6020 AATGTAAAGACGATTTTCGATGTTGGTTATCCAATTACAGAA 6061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143320091889690