Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 197 2e-45
seq95291 181 1e-40
>seq80997
Length=4773
Score = 197 bits (218), Expect = 2e-45
Identities = 292/414 (71%), Gaps = 0/414 (0%)
Strand=Plus/Minus
Query 67907 AGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGAT 67966
|||||||| |||||| |||| || || || |||| | ||||| ||| ||
Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714
Query 67967 CCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGAT 68026
||||||||||||||| ||||| || ||||||||||| |||||| ||| | |
Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTAC 4654
Query 68027 TCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATC 68086
|| | | |||||| | || | |||| |||| || || || || |||||||||||
Sbjct 4653 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCATC 4594
Query 68087 TAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAAC 68146
| || |||||||||||||| ||||| || || | ||| || || ||| ||||||
Sbjct 4593 AACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAAT 4534
Query 68147 AACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGAT 68206
|| |||||||||||||| ||||| || || | || || || | |||||| || | ||
Sbjct 4533 AATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAAT 4474
Query 68207 ACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGC 68266
|||||| ||||| |||||||| || || || || || || || || || | ||| |
Sbjct 4473 ACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGT 4414
Query 68267 GAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTC 68320
| || |||||||||||| ||||| ||||| |||| || | ||||| ||
Sbjct 4413 CAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTC 4360
>seq95291
Length=6073
Score = 181 bits (200), Expect = 1e-40
Identities = 279/398 (70%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 67944 GGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCAC 68003
||||| || ||||| ||| ||||||||||||||||| ||||| || ||||||||||
Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720
Query 68004 TGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGT 68063
| |||||| ||| | | || | | |||||| | || | |||| ||||
Sbjct 5721 TCACGACCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 5780
Query 68064 CCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGA 68123
|| || || || ||||||||||| | || |||||||||||||| ||||| || || | |
Sbjct 5781 CCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAA 5840
Query 68124 CCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGC 68183
|| || || ||| |||||| || |||||| ||||||| ||||| || || | ||
Sbjct 5841 CCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAGA 5900
Query 68184 GAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCA 68243
|| || | |||| | || | |||||||| ||||| |||||||| || || || || ||
Sbjct 5901 GATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCG 5960
Query 68244 ATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCA 68303
|| || || || ||| | | || |||||||||||| ||| | ||||| |||
Sbjct 5961 ATAATAAATACAGAATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATCCA 6020
Query 68304 ACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341
| || | ||||| || | ||| | ||| |||||
Sbjct 6021 ATGTAAAGACGATTTTCGATGTTGGTTATCCAATTACA 6058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565359499800600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |