Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq80997 269 3e-67 seq95291 237 2e-57 seq78999 129 7e-25 seq13836 125 8e-24 >seq80997 Length=4773 Score = 269 bits (298), Expect = 3e-67 Identities = 315/420 (75%), Gaps = 4/420 (1%) Strand=Plus/Minus Query 68388 AGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGAT 68447 |||||||| || ||| || | | || ||| ||||| | || | ||||||||| || Sbjct 4773 AGGATAGATCAAGAAAACAGTAGTAGCGGCTACAACAAGAGCTAAATATGCAACAGCAAT 4714 Query 68448 CCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAG-A 68506 ||||||||||||||| |||||| | ||||||||| ||||| |||||||| |||| | Sbjct 4713 CCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCAAGCTA 4655 Query 68507 TACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCAT 68566 ||||| | |||||| | | | |||| ||||||| || ||||| |||||||||| Sbjct 4654 CACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCACTCAT 4595 Query 68567 CAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAA 68626 ||| | ||||||||||| || |||||||| || | ||| || || ||| |||||| Sbjct 4594 CAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAA 4535 Query 68627 CAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAA 68686 || |||||||||||||| ||||| ||||| || || || |||| |||||| ||||||| Sbjct 4534 TAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAA 4475 Query 68687 TACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCT 68745 ||||||| || || || || || |||||||| || |||| || || ||||| ||||| Sbjct 4474 TACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGA-AGTTGCA 4416 Query 68746 GCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTG 68805 | | | ||||| ||||||| || || ||||| |||| |||||| || || || ||| Sbjct 4415 GTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTG 4356 >seq95291 Length=6073 Score = 237 bits (262), Expect = 2e-57 Identities = 283/379 (75%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 68425 GGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCAT 68484 || || || ||||||||| ||||||||||||||||| |||||| | ||||||||| Sbjct 5661 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCAC 5720 Query 68485 TCACGTCCCATGTATGCAA-AGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGG 68543 ||||| |||||||| |||| | ||||| | |||||| | | | |||| |||| Sbjct 5721 TCACGACCCATGTA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5779 Query 68544 ACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAG 68603 ||| || ||||| ||||||||||||| | ||||||||||| || |||||||| || | Sbjct 5780 ACCGCCGTTGTATAACCACTCATCAACAGAAGCTGCTTCCCAGATCGGATAAAAATGCAA 5839 Query 68604 ACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAG 68663 ||| || || ||| |||||| || |||||| ||||||| ||||| ||||| || || Sbjct 5840 ACCTATAGCCGCAGAAGTAGGAATAATCGCACCAAAAATGATATTGTTTCCATAAAGTAG 5899 Query 68664 TGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGC 68723 || |||| |||| | |||||||||||||| || || || || || |||||||| || || Sbjct 5900 AGATCCAGAAACAAGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGC 5959 Query 68724 GACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAAC 68782 || || || ||||| |||| | | | ||||| ||||||| || | ||||| | Sbjct 5960 GATAATAAATACAGA-ATTTGCAGTCAATAAAGTAGGAATCATCAAAACATCAAACCATC 6018 Query 68783 CAACGTAAAGGCGGTTCTC 68801 ||| |||||| || || || Sbjct 6019 CAATGTAAAGACGATTTTC 6037 >seq78999 Length=659 Score = 129 bits (142), Expect = 7e-25 Identities = 218/313 (70%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| | || ||| | || ||||| |||| | ||||| || ||||||||| | | Sbjct 11 ATTAAAGAGTGTTTCCATGTGGTAGAACCTCTTTAGCGAATATAAGGTTTTCATGAAGCT 70 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 ||| | | ||| ||| |||||| |||||| || || | ||| | || ||||||| Sbjct 71 AATCTTGAACTCCCATCCACCCACGAATACCTTCGTTTAAGAAAATACTTTTGGTGTAGA 130 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || | || ||||||||| | | || |||| || |||||||||||||||| Sbjct 131 AAGTCTCAAA-TAAGGATCTTCTGCTCCACGAATTTCTTTAGAAACAAAGTCATAAGCAC 189 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| || || | || || | || | | | | ||| | ||| | || || | Sbjct 190 GTAGGTTTAGGGCCAAACTAACTACCCCAAAAGTAATGATCCGTAAACCAGTTACTGGTA 249 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||| || || | ||||| | |||||| || |||| |||||| | | Sbjct 250 CAAATAACATACAG-AACGTAACCAACATTTATTGAAGAAAGCAACCTTAAAGATTTATG 308 Query 66886 ACCAGAAGCGGTT 66898 |||| ||||| || Sbjct 309 ACCAAAAGCGATT 321 >seq13836 Length=10167 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 67133 TGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAAC 67192 |||||| || ||||||| || |||||||| || || || || || ||| ||||||||| Sbjct 4661 TGGAGCAAAGAACCAACCAGACTGACCCAGTGGATAAATAAGGAATACAAAAACAAAAAC 4602 Query 67193 AGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA-CGTGCCA 67251 ||| || ||||| ||||| || | ||||| || || || | | || ||| || || | Sbjct 4601 AGCAATTGGACCTGAGAATGCGGTTGCATTATAAGGTCGCA-ATTGAACAGATCGAGCAA 4543 Query 67252 GTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAAT 67311 ||||||| || || | |||||| || |||| ||||||| |||||||| || |||||| Sbjct 4542 GTTCAAATTGACGTAACATGAACCCTATTAATCCGAAAGCACCGTGGAGAGCAACAAAAG 4483 Query 67312 TCCAGAGTCCTCC 67324 |||| || || || Sbjct 4482 TCCACAGACCGCC 4470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570452397406200