Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq39107 120 5e-22
>seq39107
Length=55737
Score = 120 bits (132), Expect = 5e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||| ||||| ||||| |||| || | || | ||| || ||||||
Sbjct 41169 ATTTGCATGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTG 41110
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| |||| | ||||| ||| || | |||||| || ||||||||||| || ||||||
Sbjct 41109 TAATCGGCAAGGGTTCTCCCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGA 41050
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || ||||| || || || || | || | ||| ||| || || ||
Sbjct 41049 TCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAC 40990
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || || || || || | ||||| ||||| || |||||
Sbjct 40989 GATTCTACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934
Score = 116 bits (128), Expect = 7e-21
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186
||| | |||||| | | ||||| || || |||| |||| || || |||||| ||
Sbjct 17240 TTAGAAACCACCGCGAAGGCGAAGGACAAGGTGCAGGGTAGATTCCTTCTGAATATTGTA 17181
Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246
||| | || || | | ||| || ||||| || |||||||| || | |||||||||||
Sbjct 17180 GTCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCGGCAAAGATAAGCCTCTGTTGATC 17121
Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306
||| || ||||| || || || || || || | ||| | ||| ||| ||||| ||
Sbjct 17120 AGGTGGGATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAGCT 17061
Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || | || || || || ||||| || || || ||||||||||||||
Sbjct 17060 CTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 17007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897134974081200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |