Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq39107 120 5e-22 >seq39107 Length=55737 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||| ||||| |||| || | || | ||| || |||||| Sbjct 41169 ATTTGCATGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTG 41110 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | ||||| ||| || | |||||| || ||||||||||| || |||||| Sbjct 41109 TAATCGGCAAGGGTTCTCCCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGA 41050 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || ||||| || || || || | || | ||| ||| || || || Sbjct 41049 TCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAC 40990 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || | ||||| ||||| || ||||| Sbjct 40989 GATTCTACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||| | | ||||| || || |||| |||| || || |||||| || Sbjct 17240 TTAGAAACCACCGCGAAGGCGAAGGACAAGGTGCAGGGTAGATTCCTTCTGAATATTGTA 17181 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| | || || | | ||| || ||||| || |||||||| || | ||||||||||| Sbjct 17180 GTCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCGGCAAAGATAAGCCTCTGTTGATC 17121 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 ||| || ||||| || || || || || || | ||| | ||| ||| ||||| || Sbjct 17120 AGGTGGGATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAGCT 17061 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | || || || || ||||| || || || |||||||||||||| Sbjct 17060 CTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 17007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897134974081200