Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq39107 109 8e-19 seq44648 104 3e-17 >seq39107 Length=55737 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| |||||||||||||| || || || ||| |||| Sbjct 16779 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCT 16838 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || ||||| || ||||| || || || ||||| || Sbjct 16839 GATACCATTGACAATGTAAAGGCAAAGATACAGGACAAAGAGGGTATTCCACCAGACCAG 16898 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || |||||||| |||||| | || | | |||||||| Sbjct 16899 CAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACACTTGCTGATTATAAC 16958 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || || | || |||||||| |||||||| Sbjct 16959 ATCCAGAAGGAATCCACTCTTCATTTGGTGTTAAG 16993 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||||||||| || | || || ||| ||| Sbjct 26097 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCT 26156 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||| || || || |||||||| || ||||| || || Sbjct 26157 GATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 26216 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| || ||||| || || || || ||||| | | ||||| || Sbjct 26217 CAGAGGTTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAAC 26276 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | ||||| || || ||| Sbjct 26277 AT-TCAAAAGGAGTCCACGCTCCACTTGGTG 26306 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| |||||||||||||| || || || ||| |||| Sbjct 26553 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCT 26612 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || ||||| || ||||| || || || ||||| || Sbjct 26613 GATACCATTGACAATGTAAAGGCAAAGATACAGGACAAAGAGGGTATTCCACCAGACCAG 26672 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || |||||||| |||||| |||| | | |||||||| Sbjct 26673 CAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAAC 26732 Query 156003 AT 156004 || Sbjct 26733 AT 26734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||||||||| || | || || ||| ||| Sbjct 29420 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCT 29479 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||| || || || |||||||| || ||||| || || Sbjct 29480 GATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 29539 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| || ||||| || || || || ||||| | | ||||| || Sbjct 29540 CAGAGGTTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAAC 29599 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | ||||| || || ||| Sbjct 29600 AT-TCAAAAGGAGTCCACGCTCCACTTGGTG 29629 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| |||||||||||||| || || || ||| |||| Sbjct 41390 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCT 41449 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || ||||| || ||||| || || || ||||| || Sbjct 41450 GATACCATTGACAATGTAAAGGCAAAGATACAGGACAAAGAGGGTATTCCACCAGACCAG 41509 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || |||||||| |||||| |||| | | |||||||| Sbjct 41510 CAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAAC 41569 Query 156003 AT 156004 || Sbjct 41570 AT 41571 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||||||||| || | || || ||| ||| Sbjct 46351 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTGGAGGTGGAATCCTCT 46410 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||| || || || |||||||| || ||||| || || Sbjct 46411 GATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 46470 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| || ||||| || || || || ||||| | | ||||| || Sbjct 46471 CAGAGGTTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAAC 46530 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | ||||| || || ||| Sbjct 46531 AT-TCAAAAGGAGTCCACGCTCCACTTGGTG 46560 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| |||||||||||||| || || || ||| |||| Sbjct 29876 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCT 29935 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || ||||| || || || ||||| || Sbjct 29936 GATACCATTGATAATGTAAAGGCAAAGATCCAGGACAAAGAGGGTATTCCACCAGACCAG 29995 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || |||||||| |||||| |||| | | |||||||| Sbjct 29996 CAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAAC 30055 Query 156003 AT 156004 || Sbjct 30056 AT 30057 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || ||||| | || ||||| ||| Sbjct 43543 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTCGAGAGTTCA 43602 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || ||||| || || || || ||||| || Sbjct 43603 GATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 43662 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| || ||||| |||||| |||||| | | ||||||||| Sbjct 43663 CAGAGGCTTATCTTCGCCGGGAAACAGCTTGAAGATGGAAGAACTCTTGCGGATTATAAT 43722 Query 156003 AT 156004 || Sbjct 43723 AT 43724 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || ||||| | || ||||| ||| Sbjct 48553 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTCGAGAGTTCA 48612 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || ||||| || || || || ||||| || Sbjct 48613 GATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 48672 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| || ||||| |||||| |||||| | | ||||||||| Sbjct 48673 CAGAGGCTTATCTTCGCCGGGAAACAGCTTGAAGATGGAAGAACTCTTGCGGATTATAAT 48732 Query 156003 AT 156004 || Sbjct 48733 AT 48734 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || ||||| | || ||||| ||| Sbjct 49816 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTCGAGAGTTCA 49875 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || ||||| || || || || ||||| || Sbjct 49876 GATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 49935 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| || ||||| |||||| |||||| | | ||||||||| Sbjct 49936 CAGAGGCTTATCTTCGCCGGGAAACAGCTTGAAGATGGAAGAACTCTTGCGGATTATAAT 49995 Query 156003 AT 156004 || Sbjct 49996 AT 49997 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || ||||||||||| || || || || ||| Sbjct 16551 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 16610 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || ||||| || || || || ||||| || Sbjct 16611 GATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 16670 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| || ||||| |||||| ||||| | | |||||||| Sbjct 16671 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAAC 16730 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| | || || || || || || || Sbjct 16731 ATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 16765 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || ||||||||||| || || || || ||| Sbjct 26325 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 26384 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || ||||| || || || || ||||| || Sbjct 26385 GATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 26444 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| || ||||| |||||| ||||| | | |||||||| Sbjct 26445 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAAC 26504 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| | || || || || || || || Sbjct 26505 ATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 26539 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || ||||||||||| || || || || ||| Sbjct 29648 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 29707 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || ||||| || || || || ||||| || Sbjct 29708 GATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 29767 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| || ||||| |||||| ||||| | | |||||||| Sbjct 29768 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAAC 29827 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| | || || || || || || || Sbjct 29828 ATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 29862 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || ||||||||||| || || || || ||| Sbjct 46579 ATGCAAATCTTTGTGAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 46638 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || ||||| || || || || ||||| || Sbjct 46639 GATACCATTGATAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 46698 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| || ||||| |||||| ||||| | | |||||||| Sbjct 46699 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAAC 46758 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| | || || || || || || || Sbjct 46759 ATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 46793 >seq44648 Length=6574 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || | ||||||||||||||||| || || ||||| ||| Sbjct 5310 AATGCAGATTTTTGTCAAGACTCTTACTGGAAAAACTATTACTTTGGAGGTCGAGAGTTC 5369 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| || ||||| || || || ||||| |||||||| || Sbjct 5370 AGACACGATTGACAATGTGAAGGCAAAGATACAGGACAAGGAGGGCATTCCTCCAGATCA 5429 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||||| ||| || |||||||| || ||| | ||| | | ||||| || Sbjct 5430 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACTCTGGCTGATTACAA 5489 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 5490 CATTCAGAAGGAGTCCACTCTTCAT 5514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729822438206000