Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_021298.1
Length=51252
Score E
Sequences producing significant alignments: (Bits) Value
seq26502 311 3e-80
>seq26502
Length=2726
Score = 311 bits (344), Expect = 3e-80
Identities = 355/473 (75%), Gaps = 4/473 (1%)
Strand=Plus/Minus
Query 39884 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTC 39943
|||||||||||| | ||||||||| ||||| ||||||||||| || || || |||
Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238
Query 39944 CAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 40003
|| |||| | ||| || ||||| | ||||||||| |||| |||||| ||||||||
Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178
Query 40004 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 40063
|||||||||||| || |||||||||||||| | ||| || || | |||||| ||| ||
Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118
Query 40064 GTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGC-ACCCAC-ACCGGGATGTGGTCG 40121
|||||||||||||| || ||||||||| |||| || || | ||||||| ||||
Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCTGC--TCGCGACGCATGATCGGGATGATGTCG 2060
Query 40122 ACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGA 40181
| ||| |||||| |||||||| || ||||| |||||||| ||| |||||| ||
Sbjct 2059 AGCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGC 2000
Query 40182 CCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATG 40241
|| ||||| ||||||||| ||||| |||| ||| || || ||||||| || ||
Sbjct 1999 CCCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGA 1940
Query 40242 CCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGG 40301
|||||| |||| ||||||| ||| || |||||| ||| || ||| || |||||||||
Sbjct 1939 GCCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGG 1880
Query 40302 GGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40354
||||| || ||||| ||| | | || ||||||||| ||| ||| ||
Sbjct 1879 GGCATGTCCTTCCCCATGACGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827
Score = 183 bits (202), Expect = 1e-41
Identities = 148/179 (83%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 40495 GGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT 40554
|||| |||||||||| ||||| |||||||| |||||||| || ||||| ||||||||||
Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563
Query 40555 CGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCA 40614
||||||| || |||||||| || |||||||||||||||||| | | ||||||||||
Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCATAGGCGACCA 1503
Query 40615 GCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAG 40673
|||||| || | ||||| ||||| || ||||||| || |||||| ||||| ||||||
Sbjct 1502 TCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444
Score = 149 bits (164), Expect = 2e-31
Identities = 152/197 (77%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 39532 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTG---CCCATCGCCCGGCGAAGCAGGT 39588
|| ||| |||| |||| ||||| ||||||||| |||||||| ||||| || | ||
Sbjct 2718 CGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662
Query 39589 CGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGT 39648
| |||||||||||| || ||||||||| |||||| | | | |||||||||||||
Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATGACCTGCTCCTGGT 2602
Query 39649 AGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGT 39708
||||||||||| | ||| | ||||||||||| | || | ||| |||| ||||||||
Sbjct 2601 AGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGGGGT 2542
Query 39709 GGATCGGCGTGATCGCC 39725
||||||| |||||| ||
Sbjct 2541 GGATCGGGGTGATCTCC 2525
Score = 111 bits (122), Expect = 5e-20
Identities = 305/453 (67%), Gaps = 17/453 (4%)
Strand=Plus/Minus
Query 41045 CTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGTGAC-GTAGTGGGAAT 41103
||| ||||||||||| || |||| ||| | | ||| | | |||| |||||| || |
Sbjct 973 CTGCACGCACAGCAGGGCCGCGTGGGCGTCGGCCTCGT-GCTGGTGGGTGTAGTGCGAGT 915
Query 41104 CGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGA 41163
|||| || |||| | | || |||||| ||| |||| || ||||||| ||
Sbjct 914 CGTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAGATCCGTCATGA 855
Query 41164 CCCGGCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCAGGTAGCGCTCGCGACCCA 41223
|||||||||||||| | |||||||||||||| ||| | |||| ||| || |
Sbjct 854 CCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGA 795
Query 41224 GGATCTCCAGCCAGTCGCCAGCGGCCCTGACTGCCTCGTCGTACTGACCCAGGTTCAGCC 41283
||| ||| | | || | |||||| | || |||||||||| || || |||||
Sbjct 794 AGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGCCGAGCCGCAGCC 735
Query 41284 TGGTCATGACTTCGCCACCAGGGCACCCCGTGGTTCCGATGATGCCCTCGCTGCAC-TCG 41342
||| || || || ||||||||||| || |||||| |||| || | || ||
Sbjct 734 GCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCTTGCCGTACGTCT 675
Query 41343 GCGACGAGTTCCTTGTCGAGGCGGGCGTACTTGCCCATCAG--CCCCTCC-TGGTAG-GA 41398
| || || || ||| | || | |||| | || ||||||| || | | |
Sbjct 674 G-GAGCAGCTCGCGGTCCATACGCG---GCTTG--AAGTAGTACCCCTCCATGCTCGACA 621
Query 41399 GCGAGACGTGATGCGCATGAGGTTGTGAAGGCCCGTCTTGTTCT-GCGCGAGCATGGTCA 41457
||||| | | || | ||||||||| | |||| | || ||| || | | ||||||||
Sbjct 620 GCGAG--CTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCA-CATGGTCA 564
Query 41458 TGTGCGTGTACGCACCGTTACCCGACACGTCGT 41490
|||| |||||||| || ||||||||||||||
Sbjct 563 TGTGGGTGTACGCGCCCGAACCCGACACGTCGT 531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163448798317380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |