Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq26502 311 3e-80 >seq26502 Length=2726 Score = 311 bits (344), Expect = 3e-80 Identities = 355/473 (75%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 39884 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTC 39943 |||||||||||| | ||||||||| ||||| ||||||||||| || || || ||| Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238 Query 39944 CAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 40003 || |||| | ||| || ||||| | ||||||||| |||| |||||| |||||||| Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178 Query 40004 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 40063 |||||||||||| || |||||||||||||| | ||| || || | |||||| ||| || Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118 Query 40064 GTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGC-ACCCAC-ACCGGGATGTGGTCG 40121 |||||||||||||| || ||||||||| |||| || || | ||||||| |||| Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCTGC--TCGCGACGCATGATCGGGATGATGTCG 2060 Query 40122 ACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGA 40181 | ||| |||||| |||||||| || ||||| |||||||| ||| |||||| || Sbjct 2059 AGCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGC 2000 Query 40182 CCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATG 40241 || ||||| ||||||||| ||||| |||| ||| || || ||||||| || || Sbjct 1999 CCCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGA 1940 Query 40242 CCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGG 40301 |||||| |||| ||||||| ||| || |||||| ||| || ||| || ||||||||| Sbjct 1939 GCCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGG 1880 Query 40302 GGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40354 ||||| || ||||| ||| | | || ||||||||| ||| ||| || Sbjct 1879 GGCATGTCCTTCCCCATGACGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827 Score = 183 bits (202), Expect = 1e-41 Identities = 148/179 (83%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 40495 GGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT 40554 |||| |||||||||| ||||| |||||||| |||||||| || ||||| |||||||||| Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563 Query 40555 CGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCA 40614 ||||||| || |||||||| || |||||||||||||||||| | | |||||||||| Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCATAGGCGACCA 1503 Query 40615 GCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAG 40673 |||||| || | ||||| ||||| || ||||||| || |||||| ||||| |||||| Sbjct 1502 TCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444 Score = 149 bits (164), Expect = 2e-31 Identities = 152/197 (77%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 39532 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTG---CCCATCGCCCGGCGAAGCAGGT 39588 || ||| |||| |||| ||||| ||||||||| |||||||| ||||| || | || Sbjct 2718 CGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662 Query 39589 CGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGT 39648 | |||||||||||| || ||||||||| |||||| | | | ||||||||||||| Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATGACCTGCTCCTGGT 2602 Query 39649 AGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGT 39708 ||||||||||| | ||| | ||||||||||| | || | ||| |||| |||||||| Sbjct 2601 AGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGGGGT 2542 Query 39709 GGATCGGCGTGATCGCC 39725 ||||||| |||||| || Sbjct 2541 GGATCGGGGTGATCTCC 2525 Score = 111 bits (122), Expect = 5e-20 Identities = 305/453 (67%), Gaps = 17/453 (4%) Strand=Plus/Minus Query 41045 CTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGTGAC-GTAGTGGGAAT 41103 ||| ||||||||||| || |||| ||| | | ||| | | |||| |||||| || | Sbjct 973 CTGCACGCACAGCAGGGCCGCGTGGGCGTCGGCCTCGT-GCTGGTGGGTGTAGTGCGAGT 915 Query 41104 CGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGA 41163 |||| || |||| | | || |||||| ||| |||| || ||||||| || Sbjct 914 CGTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAGATCCGTCATGA 855 Query 41164 CCCGGCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCAGGTAGCGCTCGCGACCCA 41223 |||||||||||||| | |||||||||||||| ||| | |||| ||| || | Sbjct 854 CCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGA 795 Query 41224 GGATCTCCAGCCAGTCGCCAGCGGCCCTGACTGCCTCGTCGTACTGACCCAGGTTCAGCC 41283 ||| ||| | | || | |||||| | || |||||||||| || || ||||| Sbjct 794 AGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGCCGAGCCGCAGCC 735 Query 41284 TGGTCATGACTTCGCCACCAGGGCACCCCGTGGTTCCGATGATGCCCTCGCTGCAC-TCG 41342 ||| || || || ||||||||||| || |||||| |||| || | || || Sbjct 734 GCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCTTGCCGTACGTCT 675 Query 41343 GCGACGAGTTCCTTGTCGAGGCGGGCGTACTTGCCCATCAG--CCCCTCC-TGGTAG-GA 41398 | || || || ||| | || | |||| | || ||||||| || | | | Sbjct 674 G-GAGCAGCTCGCGGTCCATACGCG---GCTTG--AAGTAGTACCCCTCCATGCTCGACA 621 Query 41399 GCGAGACGTGATGCGCATGAGGTTGTGAAGGCCCGTCTTGTTCT-GCGCGAGCATGGTCA 41457 ||||| | | || | ||||||||| | |||| | || ||| || | | |||||||| Sbjct 620 GCGAG--CTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCA-CATGGTCA 564 Query 41458 TGTGCGTGTACGCACCGTTACCCGACACGTCGT 41490 |||| |||||||| || |||||||||||||| Sbjct 563 TGTGGGTGTACGCGCCCGAACCCGACACGTCGT 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163448798317380