Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021301.1 Length=56279 Score E Sequences producing significant alignments: (Bits) Value seq24349 518 1e-142 seq73813 86.0 2e-12 >seq24349 Length=3626 Score = 518 bits (574), Expect = 1e-142 Identities = 599/797 (75%), Gaps = 15/797 (2%) Strand=Plus/Minus Query 42909 GGTGATGCTCGGACAAGGCATGAACCTTCAGCAGGCACACACCTGCGTCTACATCGGCAT 42968 |||||||||||| || ||||||||||| |||||||| ||||| ||||| | ||||| | Sbjct 2300 GGTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGT 2241 Query 42969 TACCCACAAGTTCAACGACCTCATCCAGAGCGTGCACCGGATTCAACGGTTCGGCCA--A 43026 ||| |||| ||||||||| |||||| ||||||||| || || || ||||| || | Sbjct 2240 CACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAGCA 2181 Query 43027 ACCCACCCTTGCACCGCCCATCTCATCCACTCCGAAACCGAACGGGAAGTGGTGCGGGTC 43086 |||| ||| || || || ||| || |||||||||| || | | || | | Sbjct 2180 GAGCACC--TGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGAC 2126 Query 43087 ATCCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATT 43143 | || | | ||| |||| | | ||| || | || || |||| |||| | || Sbjct 2125 ACCCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATC 2066 Query 43144 CACGAGTACGGGCTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGGGTGC 43203 | ||||| ||| || |||||| || || || | || || ||| |||| || | Sbjct 2065 CGCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTC 2006 Query 43204 GAACGCATCGAAGCCTCTGGTGAGGGCTGGTTGTTCGCCAACAACGACTGCGTGCCCGAA 43263 || ||| ||||||| || || |||||| | |||| ||||||||||||| ||| Sbjct 2005 GAGCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAG 1946 Query 43264 ACC-GAGTCCATG-GGCGACAG-CTCGGTGGACCTGATTGTCACCAGCATTCCGTTCTCC 43320 ||| | | ||| ||| || | ||| || |||||||| ||||| || |||||||| Sbjct 1945 ACCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCG 1886 Query 43321 AACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCAT 43380 ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| Sbjct 1885 AACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCAC 1826 Query 43381 TTCTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCG-CCGGGCCG 43439 |||||| |||||||||||||||||| ||| |||| ||||| | || ||| || || || Sbjct 1825 TTCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACG 1767 Query 43440 TATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGT 43499 ||||| ||||||||||| ||||| || ||| |||||| ||||||||||| |||||| | Sbjct 1766 GATCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCAT 1707 Query 43500 GCCCACAGTGTCCCCGTTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGA 43559 ||||| || || |||||||||||||| ||| || ||||||| ||| || |||||||| Sbjct 1706 CCCCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGA 1647 Query 43560 CTACCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCG 43619 |||| | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| Sbjct 1646 CTACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCG 1587 Query 43620 GCTGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATA 43679 || |||| ||||| | |||| |||| ||| |||||||| |||||||| || || || Sbjct 1586 CCTCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTA 1527 Query 43680 CGTTCTGCTGTTCCACA 43696 | | ||||| ||||||| Sbjct 1526 CATCCTGCTCTTCCACA 1510 Score = 172 bits (190), Expect = 2e-38 Identities = 182/236 (77%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 42142 GGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGCAAGCTGGACCCGAC-ACTG-T 42199 || ||||| |||| ||||| ||||| || ||||||||| || | ||| | || | | Sbjct 3193 GGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGCT 3136 Query 42200 TCACGGCCGTCTCACTCGATGAGGCATCCGTGCTGCGCTCGTTCGGGTCGAAGACCTACC 42259 || || ||| ||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 3135 TCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTACC 3076 Query 42260 AGTCGTTCCTGGAGCTGTTCGACGGCGTGCCCTATCGGTTTGTCGCCACCGCGACGCCGT 42319 || |||||| | |||||||||| | || || || || || |||||||||||||||| Sbjct 3075 AGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCGT 3016 Query 42320 CTCCGAATCGCTTCAAGGAGCTGATCCACTACGCGGGCTATCTCGGTGTGATGGAC 42375 | || || || ||||||||||||||||||||| || | ||||| | |||||| Sbjct 3015 CACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 >seq73813 Length=1303 Score = 86.0 bits (94), Expect = 2e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 35403 GTTGCCAAGGACGTGTGCGAGGCCGCGGGGATTTCGAAGTACCGCGACGCGATCGTCCAA 35462 || || ||||| |||||||| | || || | ||||| |||||||| ||| || Sbjct 177 GTCGCGAAGGATGTGTGCGATGTACTCGGCATCGCCAAGTATCGCGACGCCTTCGCGCAG 118 Query 35463 CTGGACGACGACGAAAGGGTGTACCTGTTCGTGGACACCCCTGGCGGACCGCAACGCATG 35522 || |||| ||||||||||| || | | ||||||||||| |||||||| || | ||| Sbjct 117 CTCGACGCCGACGAAAGGGCGTCCGCGCCCGTGGACACCCTTGGCGGACGACAGCTGATG 58 Query 35523 GTCGCGGTCACCGAGGCAGGTGTGTGGTCACTGCTCATGATCAGCCGGTCACCGAAG 35579 | |||| |||| | ||||||| | ||| | | ||||| || || |||||| Sbjct 57 ACGGTCGTCAGCGAGCCCGGTGTGTTCGCGCTGATGCTCATCAGTCGATCGCCGAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179492401807470