Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq26502 309 1e-79 >seq26502 Length=2726 Score = 309 bits (342), Expect = 1e-79 Identities = 351/471 (75%), Gaps = 0/471 (0%) Strand=Plus/Minus Query 40172 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTC 40231 |||||||||||| | ||||||||| ||||| ||||||||||| || || || ||| Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238 Query 40232 CAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 40291 || |||| | ||| || ||||| | ||||||||| |||| |||||| |||||||| Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178 Query 40292 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 40351 |||||||||||| || |||||||||||||| | ||| || || | |||||| ||| || Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118 Query 40352 GTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGAC 40411 |||||||||||||| || ||||||||| ||| | | ||||||| ||||| Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCTGCTCGCGACGCATGATCGGGATGATGTCGAG 2058 Query 40412 CAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACC 40471 ||| |||||| |||||||| || ||||| |||||||| ||| |||||| || || Sbjct 2057 CAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGCCC 1998 Query 40472 TTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCC 40531 ||||| ||||||||| ||||| |||| ||| || || ||||||| || || | Sbjct 1997 CTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGAGC 1938 Query 40532 CCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGG 40591 ||||| |||| ||||||| ||| || |||||| ||| || ||| || ||||||||||| Sbjct 1937 CCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGGGG 1878 Query 40592 CATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40642 ||| || ||||| ||| | | || ||||||||| ||| ||| || Sbjct 1877 CATGTCCTTCCCCATGACGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827 Score = 183 bits (202), Expect = 1e-41 Identities = 148/179 (83%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 40783 GGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT 40842 |||| |||||||||| ||||| |||||||| |||||||| || ||||| |||||||||| Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563 Query 40843 CGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCA 40902 ||||||| || |||||||| || |||||||||||||||||| | | |||||||||| Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCATAGGCGACCA 1503 Query 40903 GCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAG 40961 |||||| || | ||||| ||||| || ||||||| || |||||| ||||| |||||| Sbjct 1502 TCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444 Score = 140 bits (154), Expect = 1e-28 Identities = 150/197 (76%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 39820 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTG---CCCATCGCCCGGCGAAGCAGGT 39876 || ||| |||| |||| ||||| ||||||||| |||||||| ||||| || | || Sbjct 2718 CGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662 Query 39877 CGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGT 39936 | |||||||||||| || ||||||||| ||| || | | | || |||||||||| Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATGACCTGCTCCTGGT 2602 Query 39937 AGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGT 39996 ||||||||||| | ||| | ||||||||||| | || | ||| |||| |||||||| Sbjct 2601 AGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGGGGT 2542 Query 39997 GGATCGGCGTGATCGCC 40013 ||||||| |||||| || Sbjct 2541 GGATCGGGGTGATCTCC 2525 Score = 105 bits (116), Expect = 2e-18 Identities = 298/449 (66%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 41333 CTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGTGAC-GTAGTGGGAAT 41391 ||| ||||||||||| || |||| ||| | | ||| | | |||| |||||| || | Sbjct 973 CTGCACGCACAGCAGGGCCGCGTGGGCGTCGGCCTCGT-GCTGGTGGGTGTAGTGCGAGT 915 Query 41392 CGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGA 41451 |||| || |||| | | || |||||| ||| |||| || ||||||| || Sbjct 914 CGTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAGATCCGTCATGA 855 Query 41452 CCCGGCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGAAGTACCGGTCACGCCCGA 41511 |||||||||||||| | |||||||||||| | ||| |||||| || |||| Sbjct 854 CCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGA 795 Query 41512 AGACCTCCAGGTACCGACCGGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTCAGCC 41571 ||| ||| || || | || || ||| |||||||||| ||||| ||||| Sbjct 794 AGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGCCGAGCCGCAGCC 735 Query 41572 GGGTCATGATCGCACCGCCAGGACATCCGGTCGTGACGACCAGGCCCTCGTTGTGC-TCG 41630 | ||| | | | ||| || || || |||||| ||| || |||| | || | || Sbjct 734 GCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCTTGCCGTACGTCT 675 Query 41631 GCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTACGACCG 41689 | || ||| ||| |||||| ||||| ||| | || | |||||| | |||| | Sbjct 674 G-GAGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCCATGCTCGACAG 620 Query 41690 CGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTG 41749 |||||| ||| | ||||||||||| ||| | || || | || || | ||| Sbjct 619 CGAGCTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCACATGGTCATGTG 560 Query 41750 CGTGTACGCACCCCGACCGCTCACGTCGT 41778 |||||||| ||| ||| |||||||| Sbjct 559 GGTGTACGCGCCCGAACCCGACACGTCGT 531 Score = 86.0 bits (94), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 12/214 (6%) Strand=Plus/Minus Query 41834 CGGGGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGCGCCGAGGT 41893 ||||| | ||||||||||| ||| | ||| ||||||| || ||| |||| | | | Sbjct 399 CGGGGTGACGTACGCCTCGAGGCCCACGATGGGCTTGATGCCGGCGTTGCGCGCGGCGTT 340 Query 41894 GAAGAAGTCGTACGCACCGTGAAGGT--TGCCGTGGTCCGTCACTGCGACGGCAGGAGCA 41951 | |||| ||| |||| || |||||| | |||||||||||||| |||| || || Sbjct 339 GTAGAACTCGAACGC--CGCGAAGGTGTTCCCGTGGTCCGTCACCGCGATCGCCGGCATG 282 Query 41952 CCCT----GGCGGGCGACCTCGGCGACCATCTGCTTCATCCGAGCGGCCCCGTCGAGGAG 42007 || | ||||| || ||| ||| |||| || ||| || ||||||||||| | Sbjct 281 CCGTAATCGGCGGCCG-CCT--GCG-TCATCGCGTTGATCTTCGCAGCCCCGTCGAGCAT 226 Query 42008 GCTGTACTCGGAGTGGTTGTGCAGGTGGACGAAG 42041 ||||||| ||| |||||||||||||||| Sbjct 225 CGAGTACTCGCTGTGCACGTGCAGGTGGACGAAG 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164406244318380