Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq26502 309 1e-79 >seq26502 Length=2726 Score = 309 bits (342), Expect = 1e-79 Identities = 351/471 (75%), Gaps = 0/471 (0%) Strand=Plus/Minus Query 39632 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTC 39691 |||||||||||| | ||||||||| |||||| | || |||||| ||| || || ||| Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238 Query 39692 CAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 39751 || |||| | ||| || ||||| | ||||||||| |||| |||||| |||||||| Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178 Query 39752 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 39811 |||||||||||| || |||||||||||||| | ||| || || | |||||| ||| || Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118 Query 39812 GTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGAC 39871 |||||||||||||| || ||||||||| ||| | | ||||||| ||||| Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCTGCTCGCGACGCATGATCGGGATGATGTCGAG 2058 Query 39872 CAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACC 39931 ||| |||||| |||||||| || ||||| |||||||| ||| |||||| || || Sbjct 2057 CAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGCCC 1998 Query 39932 TTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCC 39991 ||||| ||||||||| ||||| |||| ||| || || ||||||| || || | Sbjct 1997 CTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGAGC 1938 Query 39992 CCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTCGAGGGG 40051 ||||| |||| ||||||| ||| || |||||| ||| || ||| ||||| |||||||| Sbjct 1937 CCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGGGG 1878 Query 40052 CATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40102 ||| || ||||| ||| | | || ||||||||| ||| ||| || Sbjct 1877 CATGTCCTTCCCCATGACGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827 Score = 174 bits (192), Expect = 5e-39 Identities = 146/179 (82%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 40243 GGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCT 40302 |||| |||||||||| ||||| |||||||| |||||||| || ||||| ||||| |||| Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563 Query 40303 CGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCA 40362 ||||||| || |||||||| || |||||||||||||||||| | | |||||||||| Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCATAGGCGACCA 1503 Query 40363 GCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAG 40421 |||||| || | ||||| ||||| || ||||||| || ||||| ||||| |||||| Sbjct 1502 TCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444 Score = 127 bits (140), Expect = 7e-25 Identities = 147/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 39280 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTG---CCCATCGCCCGGCGAAGCAGGT 39336 || ||| |||| |||| ||||| ||||||||| |||||||| ||||| || | || Sbjct 2718 CGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662 Query 39337 CGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGT 39396 | |||||||| ||| || ||||||||| ||| || | | | ||||||||||||| Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATGACCTGCTCCTGGT 2602 Query 39397 AGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGT 39456 ||||||| | | | | | | ||||||||||| | || | ||| |||| |||||||| Sbjct 2601 AGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGGGGT 2542 Query 39457 GGATCGGCGTGATCGCC 39473 ||||||| |||||| || Sbjct 2541 GGATCGGGGTGATCTCC 2525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162890288150130