Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq80997 253 2e-62 seq95291 233 2e-56 seq78999 123 3e-23 seq13836 123 3e-23 seq76780 107 2e-18 >seq80997 Length=4773 Score = 253 bits (280), Expect = 2e-62 Identities = 325/442 (74%), Gaps = 6/442 (1%) Strand=Plus/Plus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| | ||| | ||| || | || ||||| || | || ||||| ||||| | Sbjct 4335 CTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 4394 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 ||||||||| ||| | ||| | ||||| | || || | || || |||||||| || Sbjct 4395 GATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || || || ||||| || ||||| || ||| |||| ||||| | || || ||||| Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 ||||| |||||||| || ||||| ||||| ||||| ||| |||| || ||||| || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||||||| ||| | ||||| ||| | |||||||| ||||||| |||| |||| Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 151138 CTTCCACTTCCTGATTG--GTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 | |||||| | ||| ||| || ||| ||||||||||||||||||||||| || Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTT 4692 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAG 151254 || ||||||||||||| ||||| ||| |||||||| | |||| |||| || || | Sbjct 4693 CGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTAC 4751 Query 151255 TGCAGTGTTCCTCGTCTATCCT 151276 | | || ||| | |||||||| Sbjct 4752 TACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 233 bits (258), Expect = 2e-56 Identities = 285/379 (75%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 || ||||| || | || ||||| | ||| |||||||||| ||| | ||| | |||| Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAA-- 5977 Query 150926 ATT-TGC-TTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTG 150983 ||| || || || | || || |||||||| || || || || || ||||| || |||| Sbjct 5976 ATTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 5917 Query 150984 AACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTT 151043 | | ||| |||| ||||| | || || ||||| ||||| | |||||| || ||||| Sbjct 5916 AGCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTA 5857 Query 151044 CTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAAT 151103 ||||| ||||| ||| |||| || ||||| |||||||||||||| ||| | ||||| | Sbjct 5856 CTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGT 5797 Query 151104 GGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTAT--CTA 151161 || | |||||||| ||||||| |||| |||| | |||||| | ||||| | || Sbjct 5796 GGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT- 5738 Query 151162 TGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTG 151221 |||| |||||||||||||||||||||| || || ||||||||||||| ||||| || Sbjct 5737 TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TG 5680 Query 151222 C-GTTGCATACTCTGCTCC 151239 | |||||||| || ||||| Sbjct 5679 CTGTTGCATATTCAGCTCC 5661 >seq78999 Length=659 Score = 123 bits (136), Expect = 3e-23 Identities = 215/310 (69%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 153062 CTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATT 153121 |||| || || ||||| | || ||| ||||||| ||||||| | ||| | | || Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT 264 Query 153122 TCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTC 153181 || |||| | |||||||| || | ||| | ||| | | || |||| | || || Sbjct 263 -CTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205 Query 153182 TTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATC 153241 | || || || || |||||||| || ||||| ||| ||||||| | | ||||||||| Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145 Query 153242 CTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGT 153301 || ||||||||| ||||| || || | ||| | || ||||||||| |||||| ||| Sbjct 144 CT-TATTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86 Query 153302 TGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAG 153361 ||| | | || | | |||||| ||| | | ||| || ||||||| | |||| | Sbjct 85 TGGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATG 26 Query 153362 GCAACGCTCT 153371 | ||| |||| Sbjct 25 GAAACACTCT 16 >seq13836 Length=10167 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 152631 TCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTT 152690 |||| | || || || ||| ||||||| || |||||||| ||||||| |||| || || Sbjct 4463 TCAGTTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTT 4522 Query 152691 CATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTG 152749 |||| | || || |||||||| || || ||| || | | || || || ||||| | | Sbjct 4523 CATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCG 4581 Query 152750 CGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAAT 152809 | ||||| ||||| || |||||||||||| || || || || || || |||||||| | Sbjct 4582 CATTCTCAGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGT 4641 Query 152810 CGAGTTGGTTTTTCGCTCCA 152829 | ||||||| || |||||| Sbjct 4642 CTGGTTGGTTCTTTGCTCCA 4661 >seq76780 Length=5561 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 152500 GGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTTCTACTCCA 152559 || ||||||||||| ||| | || ||| ||||| | || || |||||||| ||||| Sbjct 417 GGCTTGGCAAGTTCTTATTTAGAAGGCTGCAACTTCTTAACCGCTGCAGTTTCCACTCCC 358 Query 152560 GCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTC 152619 || || | | | || ||| | || | || ||||||||||| || || || |||| Sbjct 357 GCTAATAGTTTAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTT 298 Query 152620 GTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCT 152679 | | ||| |||| | || || || ||| ||||||| || ||||||| ||||||| Sbjct 297 ACCTGTTGGTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGA 238 Query 152680 CTAATCGGTTTCATGCTTCGCCAGTTTGAACT 152711 |||| ||||||||| | || | |||||||| Sbjct 237 TTAATAGGTTTCATGTTACGTTAATTTGAACT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548083216820200