Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_021538.1
Length=59626
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 531 2e-146
seq73813 89.7 2e-13
>seq24349
Length=3626
Score = 531 bits (588), Expect = 2e-146
Identities = 598/794 (75%), Gaps = 11/794 (1%)
Strand=Plus/Minus
Query 46193 GTGATGCTCGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATCGGCATC 46252
||||||||||| ||||||||||||||||||||||| ||||| || | | ||||| ||
Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240
Query 46253 ACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 46312
|| |||| |||||||| |||||| | ||||||| || ||||| ||||| || |
Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181
Query 46313 CATC-CCTGCAAAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCAT 46371
| | ||||| | | || ||||| || ||||||||||| || | | || | ||
Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124
Query 46372 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 46428
|| | | ||| |||| | | ||| || | || || |||| |||| | || |
Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064
Query 46429 TGAGTACGGACTTGACCCCGAAGCGATCTCCGAGGCGCTGCAACGCTCCATCGGATGTGA 46488
|||| |||||| |||||| |||||||||| || || ||| |||| || ||
Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004
Query 46489 GCGCATCGAAGCATCCGGTGAGGGATGGGTGTTCGCCAACAACGACTGCGTTCACGAAAC 46548
|||| ||||||||||||| || ||| | |||| |||||||||||| ||| ||
Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944
Query 46549 CAA-GAGCA--TGGCAGACGATTCGGTGGATCTGATCGTCACCAGCATTCCGTTCTCCAA 46605
| || || |||| || || || || ||||||||||| || |||||||| ||
Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884
Query 46606 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACAACAACGAGCACTT 46665
||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824
Query 46666 CTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCTCGCCGGGCCGTAT 46725
|||||||||||||||||||||||| ||| |||| ||||| | || || || || ||
Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCTGCGTCCAGGACGGAT 1764
Query 46726 CTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCC 46785
||| ||||||||||| ||||| || ||| |||||| ||||||||||| |||||| | ||
Sbjct 1763 CTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCCC 1704
Query 46786 CACGGTGTCACCCTTCCACGCCGAGGCGATCTTCCACGGACGCAAACACGGCTTCGACTA 46845
||| || ||||| ||||||||||| ||| || ||||| | ||| || |||||||||||
Sbjct 1703 CACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACTA 1644
Query 46846 CCTCGGCATGATCACCGTCATCACCGATGTGGTCCGGGAAAACAACCAGACGTACCGGCT 46905
| | |||||||||||||||| |||||| || || || || ||||||||||| ||||| ||
Sbjct 1643 CATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCCT 1584
Query 46906 GGGCTGGTCAGAGCAGTGCAAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACAT 46965
|||| | ||| | |||| |||| ||| ||||||||||||||||| || || |||||
Sbjct 1583 CGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACAT 1524
Query 46966 TCTGTTGTTCCACA 46979
||| | |||||||
Sbjct 1523 CCTGCTCTTCCACA 1510
Score = 147 bits (162), Expect = 8e-31
Identities = 177/237 (75%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 45424 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 45481
||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || |
Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137
Query 45482 TTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCGGTCTTTCGGGTCCAAGACGTAC 45541
||| || ||| ||||| ||||| |||| |||| || ||||| || ||||| |||
Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077
Query 45542 CAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGGCCACGCCG 45601
||| |||||||| |||||||||| | | || ||||| | ||| || || || ||||||
Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017
Query 45602 TCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGCTATCTCGGGGTGATGGAC 45658
||||| |||||| ||||||||||||| |||||||| || | ||||| | ||||||
Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960
>seq73813
Length=1303
Score = 89.7 bits (98), Expect = 2e-13
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 37021 GTTGCCAAGGACGTGTGCGAGGCCGCGGGGATTTCGAAGTACCGCGACGCGATCGTCCAA 37080
|| || ||||| |||||||| | || || | ||||| |||||||| ||| ||
Sbjct 177 GTCGCGAAGGATGTGTGCGATGTACTCGGCATCGCCAAGTATCGCGACGCCTTCGCGCAG 118
Query 37081 CTGGACGACGACGAAAGGGTGTACCTGTTCGTGGACACCCCTGGCGGACCGCAACGCATG 37140
|| |||| ||||||||||| || | | ||||||||||| |||||||| || | |||
Sbjct 117 CTCGACGCCGACGAAAGGGCGTCCGCGCCCGTGGACACCCTTGGCGGACGACAGCTGATG 58
Query 37141 GTCGCGGTCACCGAGGCAGGTGTGTGGTCACTGCTCATGATCAGCCGGTCGCCGAAG 37197
| |||| |||| | ||||||| | ||| | | ||||| || |||||||||
Sbjct 57 ACGGTCGTCAGCGAGCCCGGTGTGTTCGCGCTGATGCTCATCAGTCGATCGCCGAAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190174307691960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |