Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021538.1 Length=59626 Score E Sequences producing significant alignments: (Bits) Value seq24349 531 2e-146 seq73813 89.7 2e-13 >seq24349 Length=3626 Score = 531 bits (588), Expect = 2e-146 Identities = 598/794 (75%), Gaps = 11/794 (1%) Strand=Plus/Minus Query 46193 GTGATGCTCGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATCGGCATC 46252 ||||||||||| ||||||||||||||||||||||| ||||| || | | ||||| || Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240 Query 46253 ACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 46312 || |||| |||||||| |||||| | ||||||| || ||||| ||||| || | Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181 Query 46313 CATC-CCTGCAAAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCAT 46371 | | ||||| | | || ||||| || ||||||||||| || | | || | || Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 46372 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 46428 || | | ||| |||| | | ||| || | || || |||| |||| | || | Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 46429 TGAGTACGGACTTGACCCCGAAGCGATCTCCGAGGCGCTGCAACGCTCCATCGGATGTGA 46488 |||| |||||| |||||| |||||||||| || || ||| |||| || || Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 46489 GCGCATCGAAGCATCCGGTGAGGGATGGGTGTTCGCCAACAACGACTGCGTTCACGAAAC 46548 |||| ||||||||||||| || ||| | |||| |||||||||||| ||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 46549 CAA-GAGCA--TGGCAGACGATTCGGTGGATCTGATCGTCACCAGCATTCCGTTCTCCAA 46605 | || || |||| || || || || ||||||||||| || |||||||| || Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 46606 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACAACAACGAGCACTT 46665 ||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||| Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 46666 CTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCTCGCCGGGCCGTAT 46725 |||||||||||||||||||||||| ||| |||| ||||| | || || || || || Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCTGCGTCCAGGACGGAT 1764 Query 46726 CTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCC 46785 ||| ||||||||||| ||||| || ||| |||||| ||||||||||| |||||| | || Sbjct 1763 CTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCCC 1704 Query 46786 CACGGTGTCACCCTTCCACGCCGAGGCGATCTTCCACGGACGCAAACACGGCTTCGACTA 46845 ||| || ||||| ||||||||||| ||| || ||||| | ||| || ||||||||||| Sbjct 1703 CACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACTA 1644 Query 46846 CCTCGGCATGATCACCGTCATCACCGATGTGGTCCGGGAAAACAACCAGACGTACCGGCT 46905 | | |||||||||||||||| |||||| || || || || ||||||||||| ||||| || Sbjct 1643 CATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCCT 1584 Query 46906 GGGCTGGTCAGAGCAGTGCAAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACAT 46965 |||| | ||| | |||| |||| ||| ||||||||||||||||| || || ||||| Sbjct 1583 CGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACAT 1524 Query 46966 TCTGTTGTTCCACA 46979 ||| | ||||||| Sbjct 1523 CCTGCTCTTCCACA 1510 Score = 147 bits (162), Expect = 8e-31 Identities = 177/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 45424 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 45481 ||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 45482 TTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCGGTCTTTCGGGTCCAAGACGTAC 45541 ||| || ||| ||||| ||||| |||| |||| || ||||| || ||||| ||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 45542 CAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGGCCACGCCG 45601 ||| |||||||| |||||||||| | | || ||||| | ||| || || || |||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 45602 TCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGCTATCTCGGGGTGATGGAC 45658 ||||| |||||| ||||||||||||| |||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 >seq73813 Length=1303 Score = 89.7 bits (98), Expect = 2e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 37021 GTTGCCAAGGACGTGTGCGAGGCCGCGGGGATTTCGAAGTACCGCGACGCGATCGTCCAA 37080 || || ||||| |||||||| | || || | ||||| |||||||| ||| || Sbjct 177 GTCGCGAAGGATGTGTGCGATGTACTCGGCATCGCCAAGTATCGCGACGCCTTCGCGCAG 118 Query 37081 CTGGACGACGACGAAAGGGTGTACCTGTTCGTGGACACCCCTGGCGGACCGCAACGCATG 37140 || |||| ||||||||||| || | | ||||||||||| |||||||| || | ||| Sbjct 117 CTCGACGCCGACGAAAGGGCGTCCGCGCCCGTGGACACCCTTGGCGGACGACAGCTGATG 58 Query 37141 GTCGCGGTCACCGAGGCAGGTGTGTGGTCACTGCTCATGATCAGCCGGTCGCCGAAG 37197 | |||| |||| | ||||||| | ||| | | ||||| || ||||||||| Sbjct 57 ACGGTCGTCAGCGAGCCCGGTGTGTTCGCGCTGATGCTCATCAGTCGATCGCCGAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190174307691960