Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 192 7e-44
seq95291 174 2e-38
>seq80997
Length=4773
Score = 192 bits (212), Expect = 7e-44
Identities = 285/404 (71%), Gaps = 0/404 (0%)
Strand=Plus/Plus
Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294
|| ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354
||||| || | | | ||||| || || || ||| | || || |||||||| |||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 4455
Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414
||||| ||||| || || || | || || ||| | || ||| | | ||||| |||||
Sbjct 4456 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAAT 4515
Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474
||||| |||||||| | |||| |||| || ||||| || || || ||||| |||
Sbjct 4516 ATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 4575
Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534
||||||||||| || | || |||||||| || ||||| |||||||| | || || ||
Sbjct 4576 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 4635
Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594
| |||||| | |||| | || |||||||||| | |||||||||| | |
Sbjct 4636 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 4695
Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT 72638
|| || ||| | |||||||| ||| ||||| | ||| | |||
Sbjct 4696 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGT 4739
>seq95291
Length=6073
Score = 174 bits (192), Expect = 2e-38
Identities = 279/401 (70%), Gaps = 0/401 (0%)
Strand=Plus/Minus
Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294
|| ||| | ||| |||| || || ||||| | ||| |||| ||||||| ||| ||
Sbjct 6061 TTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTTG 6002
Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354
||||| || | | | ||||| | || || ||| | || || |||||||| |||
Sbjct 6001 ATGATTCCTACTTTATTGACTGCAAATTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 5942
Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414
||||| ||||| || || || | || | ||| | || ||| | | ||||| |||||
Sbjct 5941 CCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAAT 5882
Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474
||||| | |||||| | |||| |||| || ||||| || || || ||||| |||
Sbjct 5881 ATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 5822
Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534
||||||||||| || | || |||||||| || ||||| |||||||| | || || ||
Sbjct 5821 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 5762
Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594
| |||||| | |||| | || |||||||||| | |||||||||| | |
Sbjct 5761 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 5702
Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACC 72635
|| || ||| | |||||||| ||| ||||| ||||| ||
Sbjct 5701 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571269303287800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |