Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq80997 192 7e-44 seq95291 174 2e-38 >seq80997 Length=4773 Score = 192 bits (212), Expect = 7e-44 Identities = 285/404 (71%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 ||||| || | | | ||||| || || || ||| | || || |||||||| ||| Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 4455 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| ||||| || || || | || || ||| | || ||| | | ||||| ||||| Sbjct 4456 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAAT 4515 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 ||||| |||||||| | |||| |||| || ||||| || || || ||||| ||| Sbjct 4516 ATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 4575 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 ||||||||||| || | || |||||||| || ||||| |||||||| | || || || Sbjct 4576 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 4635 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | |||| | || |||||||||| | |||||||||| | | Sbjct 4636 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 4695 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT 72638 || || ||| | |||||||| ||| ||||| | ||| | ||| Sbjct 4696 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGT 4739 >seq95291 Length=6073 Score = 174 bits (192), Expect = 2e-38 Identities = 279/401 (70%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| || || ||||| | ||| |||| ||||||| ||| || Sbjct 6061 TTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTTG 6002 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 ||||| || | | | ||||| | || || ||| | || || |||||||| ||| Sbjct 6001 ATGATTCCTACTTTATTGACTGCAAATTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 5942 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| ||||| || || || | || | ||| | || ||| | | ||||| ||||| Sbjct 5941 CCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAAT 5882 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 ||||| | |||||| | |||| |||| || ||||| || || || ||||| ||| Sbjct 5881 ATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 5822 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 ||||||||||| || | || |||||||| || ||||| |||||||| | || || || Sbjct 5821 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 5762 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | |||| | || |||||||||| | |||||||||| | | Sbjct 5761 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 5702 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACC 72635 || || ||| | |||||||| ||| ||||| ||||| || Sbjct 5701 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571269303287800