Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_021560.1
Length=53102
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 165 3e-36
>seq24349
Length=3626
Score = 165 bits (182), Expect = 3e-36
Identities = 355/524 (68%), Gaps = 15/524 (3%)
Strand=Plus/Minus
Query 38810 TCTTCCTCGGCATTGGTCACAAGTTCAATGACTTCATCCAGGCCGTTCACCGCATCCAGC 38869
||||| ||||| | |||| ||||| ||| ||||||||||| |||||||||||||
Sbjct 2253 TCTTCGTCGGCGTCACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGC 2194
Query 38870 GATTT---CTCCAGACGCACAAAGTTCG-CATCGACCTCATCTACACCGAAGCGGAA--C 38923
| || | |||| |||| | || | | |||| |||||| ||||| | || |
Sbjct 2193 GCTTCGGACAGCAGA-GCACC---TGCGACGTGCACCTGATCTACGCCGAAACCGAGTCC 2138
Query 38924 GACCGGTGCGCGACAACCTCGAAGCCAAATGGCGACGCCACGTGGAGCAGATGGCAATCA 38983
|| | | ||||||| |||| || || ||| | |||| ||| | | | ||
Sbjct 2137 GA--GATCCGCGACACCCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCA 2080
Query 38984 TGACAGATATCATTCGCAAATATGGCCTGTCGTCTGCGGCGATGGCTGAAACCCTCACGC 39043
||| || | || ||| | | || || | || ||||| | | | ||||| |
Sbjct 2079 TGAGCGACGTGATCCGCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCC 2020
Query 39044 GCGCCATGGGTGTTGAGCGGATCGAAGTTTGCGGCCCGGGCTATCGGCTGGTCAACAATG 39103
|||||||||| || ||||| |||||| | ||| || |||| ||| | ||| |
Sbjct 2019 GCGCCATGGGCGTCGAGCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACG 1960
Query 39104 ATTGCGTGATGGAGT---GCAAGAAGATGGGCTCCAACAGCGTTGACCTGATTGTCACAT 39160
| |||||||| ||| || | | |||| | | || ||| |||||||| ||||| |
Sbjct 1959 ACTGCGTGATCGAGACCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGT 1900
Query 39161 CGATCCCGTTTTCCACCCAATACGAGTATTCGCCGAACTATGCCGACTTCGGTCATACCG 39220
|||||||||| || | ||| |||||||| | || | ||| ||||||||| || ||||
Sbjct 1899 CGATCCCGTTCTCGAACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCG 1840
Query 39221 AAGACAATGAGCATTTCTGGCAGCAGATGGATTTCCTCATCCCCGAATTGCTGCGGGTTC 39280
| ||||| ||| ||||||||||||||||| | ||||| || || | |||||||| |
Sbjct 1839 ACGACAACCTGCACTTCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGC 1780
Query 39281 TGGCGCCGGGGCGTGTCGCCGCAATCCATGTGAAGGATCGCATC 39324
|| || || || || || ||| ||||||||||| |||
Sbjct 1779 TGCGTCCAGGACGGATCTATGCCTGCCACGTGAAGGATCGAATC 1736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 169353048656880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |