Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq24349 165 3e-36 >seq24349 Length=3626 Score = 165 bits (182), Expect = 3e-36 Identities = 355/524 (68%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 38810 TCTTCCTCGGCATTGGTCACAAGTTCAATGACTTCATCCAGGCCGTTCACCGCATCCAGC 38869 ||||| ||||| | |||| ||||| ||| ||||||||||| ||||||||||||| Sbjct 2253 TCTTCGTCGGCGTCACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGC 2194 Query 38870 GATTT---CTCCAGACGCACAAAGTTCG-CATCGACCTCATCTACACCGAAGCGGAA--C 38923 | || | |||| |||| | || | | |||| |||||| ||||| | || | Sbjct 2193 GCTTCGGACAGCAGA-GCACC---TGCGACGTGCACCTGATCTACGCCGAAACCGAGTCC 2138 Query 38924 GACCGGTGCGCGACAACCTCGAAGCCAAATGGCGACGCCACGTGGAGCAGATGGCAATCA 38983 || | | ||||||| |||| || || ||| | |||| ||| | | | || Sbjct 2137 GA--GATCCGCGACACCCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCA 2080 Query 38984 TGACAGATATCATTCGCAAATATGGCCTGTCGTCTGCGGCGATGGCTGAAACCCTCACGC 39043 ||| || | || ||| | | || || | || ||||| | | | ||||| | Sbjct 2079 TGAGCGACGTGATCCGCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCC 2020 Query 39044 GCGCCATGGGTGTTGAGCGGATCGAAGTTTGCGGCCCGGGCTATCGGCTGGTCAACAATG 39103 |||||||||| || ||||| |||||| | ||| || |||| ||| | ||| | Sbjct 2019 GCGCCATGGGCGTCGAGCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACG 1960 Query 39104 ATTGCGTGATGGAGT---GCAAGAAGATGGGCTCCAACAGCGTTGACCTGATTGTCACAT 39160 | |||||||| ||| || | | |||| | | || ||| |||||||| ||||| | Sbjct 1959 ACTGCGTGATCGAGACCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGT 1900 Query 39161 CGATCCCGTTTTCCACCCAATACGAGTATTCGCCGAACTATGCCGACTTCGGTCATACCG 39220 |||||||||| || | ||| |||||||| | || | ||| ||||||||| || |||| Sbjct 1899 CGATCCCGTTCTCGAACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCG 1840 Query 39221 AAGACAATGAGCATTTCTGGCAGCAGATGGATTTCCTCATCCCCGAATTGCTGCGGGTTC 39280 | ||||| ||| ||||||||||||||||| | ||||| || || | |||||||| | Sbjct 1839 ACGACAACCTGCACTTCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGC 1780 Query 39281 TGGCGCCGGGGCGTGTCGCCGCAATCCATGTGAAGGATCGCATC 39324 || || || || || || ||| ||||||||||| ||| Sbjct 1779 TGCGTCCAGGACGGATCTATGCCTGCCACGTGAAGGATCGAATC 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169353048656880